RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	UBP5	P39944	805 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	MGA2	P40578	1113 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	AVT1	P47082	602 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	COQ9	Q05779	260 aa		11.8	□□□□□ -0.52
VPS60	YDR486C	RPC53	P25441	422 aa		11.79	□□□□□ -0.52
VPS60	YDR486C	IRE1	P32361	1115 aa		11.79	□□□□□ -0.52
VPS60	YDR486C	KSP1	P38691	1029 aa	Known RBP	11.79	□□□□□ -0.52
VPS60	YDR486C	SKP2	P42843	763 aa		11.79	□□□□□ -0.52
VPS60	YDR486C	PSP2	P50109	593 aa	Known RBP	11.79	□□□□□ -0.52
VPS60	YDR486C	VID30	P53076	958 aa		11.79	□□□□□ -0.52
VPS60	YDR486C	CAF130	P53280	1122 aa	Predicted RBP	11.79	□□□□□ -0.52
VPS60	YDR486C	MED1	Q12321	566 aa		11.79	□□□□□ -0.52
VPS60	YDR486C	MSH3	P25336	1018 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	MRF1	P30775	413 aa	Predicted RBP	11.78	□□□□□ -0.52
VPS60	YDR486C	RME1	P32338	300 aa	Known RBP	11.78	□□□□□ -0.52
VPS60	YDR486C	RPC25	P35718	212 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	SAP190	P36123	1033 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	SHM1	P37292	490 aa	Predicted RBP	11.78	□□□□□ -0.52
VPS60	YDR486C	SPT8	P38915	602 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	EAF5	P39995	279 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	YJR107W	P47145	328 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	CCM1	P48237	864 aa	Predicted RBP	11.78	□□□□□ -0.52
VPS60	YDR486C	SUT2	Q12286	268 aa		11.78	□□□□□ -0.52
VPS60	YDR486C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	11.77	□□□□□ -0.53	not detected
VPS60	YDR486C	RPS6A	P0CX37	236 aa	Known RBP	11.77	□□□□□ -0.53
VPS60	YDR486C	RPS6B	P0CX38	236 aa	Predicted RBP	11.77	□□□□□ -0.53
VPS60	YDR486C	PHO8	P11491	566 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	EFT1	P32324	842 aa	Known RBP	11.77	□□□□□ -0.53
VPS60	YDR486C	COT1	P32798	439 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	GPT2	P36148	743 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	MIP6	P38760	659 aa	Known RBP	11.77	□□□□□ -0.53
VPS60	YDR486C	CTM1	P38818	585 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	VPS75	P53853	264 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	COG4	Q06096	861 aa		11.77	□□□□□ -0.53
VPS60	YDR486C	PHO13	P19881	312 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	SEC65	P29478	273 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	NAM7	P30771	971 aa	Known RBP	11.76	□□□□□ -0.53
VPS60	YDR486C	AFG3	P39925	761 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	TAM41	P53230	385 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	RTT102	P53330	157 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	ULP1	Q02724	621 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	YOR131C	Q12486	218 aa		11.76	□□□□□ -0.53
VPS60	YDR486C	UBC1	P21734	215 aa	Known RBP	11.75	□□□□□ -0.53
VPS60	YDR486C	SPO11	P23179	398 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	SMY2	P32909	740 aa	Known RBP	11.75	□□□□□ -0.53
VPS60	YDR486C	MNN4	P36044	1178 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	PXL1	P36166	706 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	DAK1	P54838	584 aa	Known RBP	11.75	□□□□□ -0.53
VPS60	YDR486C	MSC2	Q03455	724 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	SPO75	Q07798	868 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	IES4	Q08561	116 aa		11.75	□□□□□ -0.53
VPS60	YDR486C	VPS35	P34110	944 aa		11.74	□□□□□ -0.53
VPS60	YDR486C	LCB2	P40970	561 aa		11.74	□□□□□ -0.53
VPS60	YDR486C	FYV8	P46949	817 aa	Known RBP	11.74	□□□□□ -0.53
VPS60	YDR486C	ACF4	P47129	309 aa		11.74	□□□□□ -0.53
VPS60	YDR486C	STR2	P47164	639 aa		11.74	□□□□□ -0.53
VPS60	YDR486C	CWC2	Q12046	339 aa	Predicted RBP	11.74	□□□□□ -0.53
VPS60	YDR486C	ATG11	Q12527	1178 aa		11.74	□□□□□ -0.53
VPS60	YDR486C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	11.73	□□□□□ -0.53	not detected
VPS60	YDR486C	EBP2	P36049	427 aa	Known RBP	11.73	□□□□□ -0.53
VPS60	YDR486C	GUA1	P38625	525 aa	Known RBP	11.73	□□□□□ -0.53
VPS60	YDR486C	RTT107	P38850	1070 aa		11.73	□□□□□ -0.53
VPS60	YDR486C	SAD1	P43589	448 aa		11.73	□□□□□ -0.53
VPS60	YDR486C	YNL146W	P53906	100 aa		11.73	□□□□□ -0.53
VPS60	YDR486C	FAL1	Q12099	399 aa	Known RBP	11.73	□□□□□ -0.53
VPS60	YDR486C	SNA3	P14359	133 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	APL1	P27351	700 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	PAH1	P32567	862 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	HFM1	P51979	1187 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	VTC3	Q02725	835 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	YML020W	Q03722	664 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	CDC53	Q12018	815 aa	Known RBP	11.72	□□□□□ -0.53
VPS60	YDR486C	OSW2	Q12202	724 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	MDM20	Q12387	796 aa	Known RBP	11.72	□□□□□ -0.53
VPS60	YDR486C	RTP1	Q12751	981 aa		11.72	□□□□□ -0.53
VPS60	YDR486C	SSB1	P11484	613 aa	Known RBP	11.71	□□□□□ -0.53
VPS60	YDR486C	CYC8	P14922	966 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	EFM2	P38347	419 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	SSB2	P40150	613 aa	Known RBP	11.71	□□□□□ -0.53
VPS60	YDR486C	AIM21	P40563	679 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	VPS62	P53285	467 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	GIR2	Q03768	265 aa	Predicted RBP	11.71	□□□□□ -0.53
VPS60	YDR486C	MLH2	Q07980	695 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	MAM3	Q12296	706 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	HIF1	Q12373	385 aa		11.71	□□□□□ -0.53
VPS60	YDR486C	CHS2	P14180	963 aa		11.7	□□□□□ -0.54
VPS60	YDR486C	TIM8	P57744	87 aa		11.7	□□□□□ -0.54
VPS60	YDR486C	YDR090C	Q03193	310 aa		11.7	□□□□□ -0.54
VPS60	YDR486C	RLP24	Q07915	199 aa	Known RBP	11.7	□□□□□ -0.54
VPS60	YDR486C	AFT1	P22149	690 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	DPH2	P32461	534 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	MUD1	P32605	298 aa	Known RBP	11.69	□□□□□ -0.54
VPS60	YDR486C	TMT1	P32643	299 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	VFA1	P40080	203 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	CUL3	P53202	744 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	ENV11	P53246	860 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	TPO2	P53283	614 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	DON1	Q05610	365 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	APL4	Q12028	832 aa		11.69	□□□□□ -0.54
VPS60	YDR486C	HFI1	Q12060	488 aa		11.69	□□□□□ -0.54

Retrieved 100 of 5,963 RNA–protein pairs in 139.7 ms