Protein–RNA interactions for Protein: P43243

MATR3, Matrin-3, humanhuman

Known RBP eCLIP

Length 847 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3P43243 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.16■■□□□ 1.461e-323■□□□□ 8.4
MATR3P43243 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.741e-323■□□□□ 8.4
MATR3P43243 SRRM2-228ENST00000576878 1141 ntTSL 219.1■□□□□ 0.651e-323■□□□□ 8.4
MATR3P43243 SRRM2-220ENST00000574593 1440 ntTSL 317.29■□□□□ 0.361e-323■□□□□ 8.4
MATR3P43243 SRRM2-204ENST00000570705 675 ntTSL 316.8■□□□□ 0.281e-323■□□□□ 8.4
MATR3P43243 SRRM2-206ENST00000571041 498 ntTSL 416.6■□□□□ 0.251e-323■□□□□ 8.4
MATR3P43243 SRRM2-213ENST00000573311 732 ntTSL 216.25■□□□□ 0.191e-323■□□□□ 8.4
MATR3P43243 SRRM2-211ENST00000572883 887 ntTSL 211.66□□□□□ -0.541e-323■□□□□ 8.4
MATR3P43243 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.151e-44■■■■□ 20.3
MATR3P43243 FGL1-206ENST00000518650 1093 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.261e-41■□□□□ 8.3
MATR3P43243 FGL1-201ENST00000381840 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.551e-41■□□□□ 8.3
MATR3P43243 FGL1-205ENST00000427924 1247 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.861e-41■□□□□ 8.3
MATR3P43243 FGL1-202ENST00000381841 1374 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.911e-41■□□□□ 8.3
MATR3P43243 FGL1-203ENST00000398054 1462 ntAPPRIS P1 TSL 5 BASIC8.94□□□□□ -0.981e-41■□□□□ 8.3
MATR3P43243 FGL1-207ENST00000518769 318 ntTSL 36.72□□□□□ -1.331e-41■□□□□ 8.3
MATR3P43243 PROX1-207ENST00000607726 562 ntTSL 415.17■□□□□ 0.027e-41■□□□□ 8.6
MATR3P43243 PHYKPL-205ENST00000476170 824 ntTSL 4 BASIC8.99□□□□□ -0.971e-38■■■□□ 17
MATR3P43243 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.86■■□□□ 1.571e-32■■■□□ 14.7
MATR3P43243 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.81e-32■■■□□ 14.7
MATR3P43243 PDS5A-204ENST00000503867 640 ntTSL 27.22□□□□□ -1.251e-32■■■□□ 14.7
MATR3P43243 PDS5A-209ENST00000512643 581 ntTSL 45.3□□□□□ -1.561e-32■■■□□ 14.7
MATR3P43243 PDS5A-210ENST00000513798 494 ntTSL 32.26□□□□□ -2.051e-32■■■□□ 14.7
MATR3P43243 FTX-207ENST00000602576 574 ntTSL 413.41□□□□□ -0.264e-32■■■□□ 18.4
MATR3P43243 FTX-208ENST00000602776 561 ntTSL 45.05□□□□□ -1.64e-32■■■□□ 18.4
MATR3P43243 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC14.31□□□□□ -0.124e-29■■■■□ 24.1
MATR3P43243 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC14.26□□□□□ -0.134e-29■■■■□ 24.1
MATR3P43243 GRIPAP1-212ENST00000619149 2828 ntTSL 213.36□□□□□ -0.274e-29■■■■□ 24.3
MATR3P43243 GRIPAP1-201ENST00000376423 3031 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.274e-29■■■■□ 24.1
MATR3P43243 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.461e-27■■□□□ 12.7
MATR3P43243 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.021e-27■■□□□ 12.7
MATR3P43243 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.41e-27■■□□□ 12.7
MATR3P43243 YWHAZ-222ENST00000523848 664 ntTSL 55.71□□□□□ -1.51e-27■■□□□ 12.7
MATR3P43243 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.721e-27■■□□□ 12.7
MATR3P43243 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.861e-27■■□□□ 12.7
MATR3P43243 NEAT1-202ENST00000501122 22743 ntBASIC5.41□□□□□ -1.543e-25■■□□□ 12.1
MATR3P43243 ARHGEF1-223ENST00000617585 737 ntTSL 224.36■■□□□ 1.493e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)21.57■■□□□ 1.043e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-210ENST00000594521 826 ntTSL 518.73■□□□□ 0.593e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.87■□□□□ 0.453e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.443e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC16.04■□□□□ 0.163e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.113e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.083e-24■■□□□ 13.2
MATR3P43243 ARHGEF1-220ENST00000600274 3439 ntTSL 1 (best)12.83□□□□□ -0.363e-24■■□□□ 13.2
MATR3P43243 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.795e-24■□□□□ 11.1
MATR3P43243 PSME4-208ENST00000481518 886 ntTSL 525.14■■□□□ 1.627e-24■■■■□ 21.7
MATR3P43243 PSME4-201ENST00000389993 6581 ntTSL 1 (best)17.02■□□□□ 0.327e-24■■■■□ 21.7
MATR3P43243 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.27e-24■■■■□ 21.7
MATR3P43243 LPCAT1-202ENST00000475622 5610 ntTSL 520.69■□□□□ 0.91e-23■■□□□ 12.5
MATR3P43243 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.091e-23■■□□□ 12.5
MATR3P43243 AL669831.3-208ENST00000634337 891 ntTSL 5 BASIC12.55□□□□□ -0.42e-23■■■■■ 54.3
MATR3P43243 AL669831.3-207ENST00000635509 941 ntTSL 59.76□□□□□ -0.852e-23■■■■■ 54.3
MATR3P43243 AL669831.3-209ENST00000440200 413 ntTSL 55.64□□□□□ -1.512e-23■■■■■ 54.3
MATR3P43243 AL669831.3-203ENST00000419394 491 ntTSL 53.89□□□□□ -1.792e-23■■■■■ 54.3
MATR3P43243 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC16.42■□□□□ 0.225e-23■□□□□ 10.9
MATR3P43243 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.125e-23■□□□□ 10.9
MATR3P43243 ABCC6-202ENST00000456970 4137 ntTSL 215.73■□□□□ 0.115e-23■□□□□ 10.9
MATR3P43243 ABCC6-203ENST00000574094 2260 ntTSL 515.44■□□□□ 0.065e-23■□□□□ 10.9
MATR3P43243 LINC00852-201ENST00000475197 1328 ntBASIC12.7□□□□□ -0.387e-23■■□□□ 13.3
MATR3P43243 LINC00852-202ENST00000538717 1327 nt10.76□□□□□ -0.697e-23■■□□□ 13.3
MATR3P43243 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.152e-22■■■□□ 16.3
MATR3P43243 SLC38A5-203ENST00000429543 656 ntTSL 515.84■□□□□ 0.132e-22■■■□□ 16.3
MATR3P43243 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.022e-22■■■□□ 16.3
MATR3P43243 AC005381.1-203ENST00000591920 569 ntTSL 513.85□□□□□ -0.193e-22■■■□□ 17.5
MATR3P43243 AC005381.1-202ENST00000592716 574 ntTSL 57□□□□□ -1.293e-22■■■□□ 17.5
MATR3P43243 VAV2-205ENST00000486113 523 ntTSL 213.86□□□□□ -0.195e-22■■□□□ 13.3
MATR3P43243 AC005381.1-204ENST00000585697 599 ntTSL 3 BASIC10.46□□□□□ -0.736e-22■■■■□ 20.6
MATR3P43243 FARP1-205ENST00000457029 602 ntTSL 59.35□□□□□ -0.918e-22■□□□□ 8.1
MATR3P43243 NDRG1-223ENST00000522665 411 ntTSL 216.48■□□□□ 0.231e-21■■■■■ 36.5
MATR3P43243 NDRG1-217ENST00000521414 2349 ntTSL 215.88■□□□□ 0.131e-21■■■■■ 36.5
MATR3P43243 NDRG1-216ENST00000521026 2145 ntTSL 215.46■□□□□ 0.071e-21■■■■■ 36.5
MATR3P43243 NDRG1-226ENST00000523642 507 ntTSL 313.32□□□□□ -0.281e-21■■■■■ 36.5
MATR3P43243 NDRG1-212ENST00000519278 3983 ntTSL 210.74□□□□□ -0.691e-21■■■■■ 36.5
MATR3P43243 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.293e-21■■□□□ 11.8
MATR3P43243 POLE3-204ENST00000479871 2396 ntTSL 215.69■□□□□ 0.19e-21■■■■□ 24.1
MATR3P43243 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.329e-21■■■■□ 24.1
MATR3P43243 POLE3-201ENST00000374169 2109 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.489e-21■■■■□ 24.1
MATR3P43243 DMXL2-201ENST00000251076 10672 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.411e-20■■■■■ 38.3
MATR3P43243 DMXL2-208ENST00000559498 571 ntTSL 57.45□□□□□ -1.221e-20■■■■■ 38.3
MATR3P43243 DMXL2-213ENST00000560891 4759 ntTSL 1 (best)5.79□□□□□ -1.481e-20■■■■■ 38.3
MATR3P43243 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.531e-20■■■■■ 38.3
MATR3P43243 DMXL2-211ENST00000560211 699 ntTSL 35.15□□□□□ -1.591e-20■■■■■ 38.3
MATR3P43243 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.671e-20■■■■■ 38.3
MATR3P43243 DMXL2-204ENST00000558124 578 ntTSL 33.21□□□□□ -1.91e-20■■■■■ 38.3
MATR3P43243 XIST-209ENST00000602587 583 ntTSL 57.22□□□□□ -1.253e-20■■■■□ 22.8
MATR3P43243 XIST-207ENST00000445814 437 ntTSL 35.46□□□□□ -1.544e-20■■■□□ 15.2
MATR3P43243 ACIN1-214ENST00000555352 579 ntTSL 410.43□□□□□ -0.744e-20■■■■□ 26.2
MATR3P43243 AL162171.3-201ENST00000617439 3178 ntBASIC8.02□□□□□ -1.134e-20■■■■■ 37.3
MATR3P43243 AL713998.1-201ENST00000412872 1605 ntTSL 1 (best) BASIC12.15□□□□□ -0.465e-20■■□□□ 14.4
MATR3P43243 RBM4-209ENST00000515838 943 ntTSL 216.28■□□□□ 0.22e-19■□□□□ 10.8
MATR3P43243 SNX5-205ENST00000463050 845 ntTSL 23.25□□□□□ -1.892e-19■□□□□ 10.9
MATR3P43243 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.672e-19■■■■■ 28
MATR3P43243 N4BP1-202ENST00000564124 2485 ntTSL 514.84□□□□□ -0.032e-19■■■■■ 28
MATR3P43243 N4BP1-203ENST00000564710 540 ntTSL 49.25□□□□□ -0.932e-19■■■■■ 28
MATR3P43243 RALGAPA2-206ENST00000620717 1432 ntTSL 5 BASIC12.74□□□□□ -0.373e-19■■■■■ 35.8
MATR3P43243 RALGAPA2-203ENST00000427175 2623 ntTSL 29.71□□□□□ -0.863e-19■■■■■ 35.8
MATR3P43243 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.13e-19■■□□□ 12.8
MATR3P43243 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.694e-19■■■□□ 15.5
MATR3P43243 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.124e-19■■■□□ 15.5
MATR3P43243 XIST-205ENST00000433732 676 ntTSL 24.06□□□□□ -1.765e-19■■■□□ 18.5
Retrieved 100 of 16,209 protein–RNA pairs in 69 ms