RNA–Protein interactions for RNA: ENST00000475622.5

LPCAT1-202, Transcript of lysophosphatidylcholine acyltransferase 1, humanhuman

TSL 5

Gene LPCAT1, Length 5,610 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT1-202ENST00000475622 DCAF8L2P0C7V8 631 aa30.38■■■□□ 2.45
LPCAT1-202ENST00000475622 SUPT5HO00267 1087 aaKnown RBP29.01■■■□□ 2.24
LPCAT1-202ENST00000475622 EHMT2Q96KQ7 1210 aa28.33■■■□□ 2.13
LPCAT1-202ENST00000475622 PELP1Q8IZL8 1130 aaKnown RBP28.31■■■□□ 2.12
LPCAT1-202ENST00000475622 SHROOM4Q9ULL8 1493 aa28.24■■■□□ 2.11
LPCAT1-202ENST00000475622 NISCHQ9Y2I1 1504 aa27.82■■■□□ 2.04
LPCAT1-202ENST00000475622 APLP2Q06481 763 aa27.79■■■□□ 2.04
LPCAT1-202ENST00000475622 FAM9AQ8IZU1 332 aaPredicted RBP27.47■■□□□ 1.99
LPCAT1-202ENST00000475622 TTBK1Q5TCY1 1321 aaPredicted RBP27.43■■□□□ 1.98
LPCAT1-202ENST00000475622 PCGF6Q9BYE7 350 aa27.42■■□□□ 1.98
LPCAT1-202ENST00000475622 ERICH6Q7L0X2 663 aa27.21■■□□□ 1.95
LPCAT1-202ENST00000475622 CENPBP07199 599 aaPredicted RBP27.19■■□□□ 1.94
LPCAT1-202ENST00000475622 CCER1Q8TC90 406 aaPredicted RBP27.03■■□□□ 1.92
LPCAT1-202ENST00000475622 RANGAP1P46060 587 aaPredicted RBP26.99■■□□□ 1.91
LPCAT1-202ENST00000475622 ZEB1P37275 1124 aaPredicted RBP26.98■■□□□ 1.91
LPCAT1-202ENST00000475622 TRIM41Q8WV44 630 aa26.77■■□□□ 1.88
LPCAT1-202ENST00000475622 ATP1B4Q9UN42 357 aaPredicted RBP26.76■■□□□ 1.87
LPCAT1-202ENST00000475622 NEFLP07196 543 aa26.65■■□□□ 1.86
LPCAT1-202ENST00000475622 YTHDC1Q96MU7 727 aaKnown RBP26.63■■□□□ 1.85
LPCAT1-202ENST00000475622 UBTFP17480 764 aaKnown RBP26.57■■□□□ 1.84
LPCAT1-202ENST00000475622 MYT1Q01538 1121 aa26.41■■□□□ 1.82
LPCAT1-202ENST00000475622 PPARGC1BQ86YN6 1023 aaKnown RBP26.28■■□□□ 1.8
LPCAT1-202ENST00000475622 TRIM26Q12899 539 aaPredicted RBP26.06■■□□□ 1.76
LPCAT1-202ENST00000475622 DAXXQ9UER7 740 aaPredicted RBP25.98■■□□□ 1.75
LPCAT1-202ENST00000475622 HRCP23327 699 aa25.94■■□□□ 1.74
LPCAT1-202ENST00000475622 POLR3GLQ9BT43 218 aa25.9■■□□□ 1.74
LPCAT1-202ENST00000475622 ITGAEP38570 1179 aa25.89■■□□□ 1.74
LPCAT1-202ENST00000475622 MYT1LQ9UL68 1186 aa25.71■■□□□ 1.71
LPCAT1-202ENST00000475622 CNGB1Q14028 1251 aaPredicted RBP25.7■■□□□ 1.7
LPCAT1-202ENST00000475622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.7■■□□□ 1.7
LPCAT1-202ENST00000475622 HNRNPUL2Q1KMD3 747 aaKnown RBP25.7■■□□□ 1.7
LPCAT1-202ENST00000475622 LOC105371045A0A1W2PR82 267 aa25.65■■□□□ 1.7
LPCAT1-202ENST00000475622 CHIC1Q5VXU3 224 aa25.43■■□□□ 1.66
LPCAT1-202ENST00000475622 RTL5Q5HYW3 569 aaPredicted RBP25.41■■□□□ 1.66
LPCAT1-202ENST00000475622 DIEXFQ68CQ4 756 aaKnown RBP25.37■■□□□ 1.65
LPCAT1-202ENST00000475622 CLSPNQ9HAW4 1339 aa25.36■■□□□ 1.65
LPCAT1-202ENST00000475622 SLC4A1APQ9BWU0 796 aaKnown RBP25.35■■□□□ 1.65
LPCAT1-202ENST00000475622 ZNF316A6NFI3 1004 aaPredicted RBP25.35■■□□□ 1.65
LPCAT1-202ENST00000475622 FAM50AQ14320 339 aaKnown RBP25.11■■□□□ 1.61
LPCAT1-202ENST00000475622 BCANQ96GW7 911 aa25.08■■□□□ 1.6
LPCAT1-202ENST00000475622 TRIM52Q96A61 297 aa25.04■■□□□ 1.6
LPCAT1-202ENST00000475622 NEUROD1Q13562 356 aa25.02■■□□□ 1.6
LPCAT1-202ENST00000475622 GTF3C3Q9Y5Q9 886 aa24.98■■□□□ 1.59
LPCAT1-202ENST00000475622 ANP32CO43423 234 aa24.87■■□□□ 1.57
LPCAT1-202ENST00000475622 CDK11AQ9UQ88 783 aaPredicted RBP24.87■■□□□ 1.57
LPCAT1-202ENST00000475622 ZNF326Q5BKZ1 582 aaKnown RBP24.84■■□□□ 1.57
LPCAT1-202ENST00000475622 ZBTB47Q9UFB7 747 aaPredicted RBP24.77■■□□□ 1.56
LPCAT1-202ENST00000475622 BCL11AQ9H165 835 aa24.64■■□□□ 1.54
LPCAT1-202ENST00000475622 CANXP27824 592 aaKnown RBP24.63■■□□□ 1.53
LPCAT1-202ENST00000475622 SLC24A1O60721 1099 aa24.53■■□□□ 1.52
LPCAT1-202ENST00000475622 ACIN1Q9UKV3 1341 aaKnown RBP24.51■■□□□ 1.51
LPCAT1-202ENST00000475622 ANP32AP39687 249 aaKnown RBP24.49■■□□□ 1.51
LPCAT1-202ENST00000475622 PABPN1Q86U42 306 aaKnown RBP eCLIP24.46■■□□□ 1.516e-9■■□□□ 14
LPCAT1-202ENST00000475622 NEFMP07197 916 aa24.43■■□□□ 1.5
LPCAT1-202ENST00000475622 NPM2Q86SE8 214 aaKnown RBP24.41■■□□□ 1.5
LPCAT1-202ENST00000475622 FBLN2P98095 1184 aa24.4■■□□□ 1.5
LPCAT1-202ENST00000475622 P3H3Q8IVL6 736 aa24.32■■□□□ 1.48
LPCAT1-202ENST00000475622 ARID3CA6NKF2 412 aa24.31■■□□□ 1.48
LPCAT1-202ENST00000475622 FKBP8Q14318 412 aa24.25■■□□□ 1.47
LPCAT1-202ENST00000475622 EIF5BO60841 1220 aaKnown RBP24.22■■□□□ 1.47
LPCAT1-202ENST00000475622 ZNF777Q9ULD5 760 aaPredicted RBP24.2■■□□□ 1.47
LPCAT1-202ENST00000475622 CSRNP3Q8WYN3 585 aa24.19■■□□□ 1.46
LPCAT1-202ENST00000475622 ANP32BQ92688 251 aaKnown RBP24.16■■□□□ 1.46
LPCAT1-202ENST00000475622 ABCC9O60706 1549 aa24.16■■□□□ 1.46
LPCAT1-202ENST00000475622 HSP90AA1P07900 732 aaKnown RBP24.14■■□□□ 1.46
LPCAT1-202ENST00000475622 HNRNPUQ00839 825 aaKnown RBP eCLIP24.12■■□□□ 1.45
LPCAT1-202ENST00000475622 FAM9BQ8IZU0 186 aa24.06■■□□□ 1.44
LPCAT1-202ENST00000475622 TONSLQ96HA7 1378 aa24.06■■□□□ 1.44
LPCAT1-202ENST00000475622 UPF2Q9HAU5 1272 aaKnown RBP24.06■■□□□ 1.44
LPCAT1-202ENST00000475622 DDX10Q13206 875 aaKnown RBP24.04■■□□□ 1.44
LPCAT1-202ENST00000475622 SALL2Q9Y467 1007 aaPredicted RBP24.01■■□□□ 1.43
LPCAT1-202ENST00000475622 CHGAP10645 457 aaKnown RBP23.95■■□□□ 1.42
LPCAT1-202ENST00000475622 CCDC136Q96JN2 1154 aa23.93■■□□□ 1.42
LPCAT1-202ENST00000475622 NBR1Q14596 966 aa23.9■■□□□ 1.42
LPCAT1-202ENST00000475622 TMC1Q8TDI8 760 aa23.87■■□□□ 1.41
LPCAT1-202ENST00000475622 ESF1Q9H501 851 aaKnown RBP23.86■■□□□ 1.41
LPCAT1-202ENST00000475622 STAG3Q9UJ98 1225 aa23.85■■□□□ 1.41
LPCAT1-202ENST00000475622 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.84■■□□□ 1.41
LPCAT1-202ENST00000475622 ARXQ96QS3 562 aa23.83■■□□□ 1.4
LPCAT1-202ENST00000475622 GLIPR1L2Q4G1C9 344 aa23.81■■□□□ 1.4
LPCAT1-202ENST00000475622 MRS2Q9HD23 443 aa23.76■■□□□ 1.39
LPCAT1-202ENST00000475622 CHIC2Q9UKJ5 165 aa23.76■■□□□ 1.39
LPCAT1-202ENST00000475622 WDR43Q15061 677 aaKnown RBP eCLIP23.74■■□□□ 1.39
LPCAT1-202ENST00000475622 IRX6P78412 446 aaPredicted RBP23.71■■□□□ 1.39
LPCAT1-202ENST00000475622 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.7■■□□□ 1.386e-10■■□□□ 11.5
LPCAT1-202ENST00000475622 PLPPR3Q6T4P5 718 aa23.69■■□□□ 1.38
LPCAT1-202ENST00000475622 KDM2AQ9Y2K7 1162 aa23.65■■□□□ 1.38
LPCAT1-202ENST00000475622 MIER1Q8N108 512 aa23.65■■□□□ 1.38
LPCAT1-202ENST00000475622 DCAF1Q9Y4B6 1507 aa23.64■■□□□ 1.37
LPCAT1-202ENST00000475622 SCAF1Q9H7N4 1312 aaKnown RBP23.61■■□□□ 1.37
LPCAT1-202ENST00000475622 HIRIP3Q9BW71 556 aaPredicted RBP23.61■■□□□ 1.37
LPCAT1-202ENST00000475622 NPM1P06748 294 aaKnown RBP eCLIP23.55■■□□□ 1.36
LPCAT1-202ENST00000475622 MYH16Q9H6N6 1097 aa23.54■■□□□ 1.36
LPCAT1-202ENST00000475622 TSPY4P0CV99 314 aa23.53■■□□□ 1.36
LPCAT1-202ENST00000475622 TSPY10P0CW01 314 aa23.53■■□□□ 1.36
LPCAT1-202ENST00000475622 EIF4G2P78344 907 aaKnown RBP eCLIP23.48■■□□□ 1.353e-6■■■■■ 33.2
LPCAT1-202ENST00000475622 MTUS2Q5JR59 1369 aa23.45■■□□□ 1.34
LPCAT1-202ENST00000475622 BECN1Q14457 450 aa23.44■■□□□ 1.34
LPCAT1-202ENST00000475622 DDRGK1Q96HY6 314 aa23.43■■□□□ 1.34
LPCAT1-202ENST00000475622 TRIM44Q96DX7 344 aaPredicted RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms