RNA–Protein interactions for RNA: ENST00000600274.5

ARHGEF1-220, Transcript of Rho guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best)

Gene ARHGEF1, Length 3,439 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF1-220ENST00000600274 NISCHQ9Y2I1 1504 aa23.77■■□□□ 1.4
ARHGEF1-220ENST00000600274 SHROOM4Q9ULL8 1493 aa20.86■□□□□ 0.93
ARHGEF1-220ENST00000600274 DCAF8L2P0C7V8 631 aa20.73■□□□□ 0.91
ARHGEF1-220ENST00000600274 SUPT5HO00267 1087 aaKnown RBP20.41■□□□□ 0.86
ARHGEF1-220ENST00000600274 ZCCHC6Q5VYS8 1495 aaKnown RBP19.99■□□□□ 0.79
ARHGEF1-220ENST00000600274 CCDC180Q9P1Z9 1646 aa19.99■□□□□ 0.79
ARHGEF1-220ENST00000600274 ABCC9O60706 1549 aa19.39■□□□□ 0.7
ARHGEF1-220ENST00000600274 CHIC1Q5VXU3 224 aa19.38■□□□□ 0.69
ARHGEF1-220ENST00000600274 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
ARHGEF1-220ENST00000600274 DCAF1Q9Y4B6 1507 aa19.19■□□□□ 0.66
ARHGEF1-220ENST00000600274 MYO15BQ96JP2 1530 aa19.14■□□□□ 0.65
ARHGEF1-220ENST00000600274 EHMT2Q96KQ7 1210 aa19.09■□□□□ 0.65
ARHGEF1-220ENST00000600274 LOC105371045A0A1W2PR82 267 aa19.05■□□□□ 0.64
ARHGEF1-220ENST00000600274 FAM9AQ8IZU1 332 aaPredicted RBP18.99■□□□□ 0.63
ARHGEF1-220ENST00000600274 PCGF6Q9BYE7 350 aa18.88■□□□□ 0.61
ARHGEF1-220ENST00000600274 RSF1Q96T23 1441 aaPredicted RBP18.86■□□□□ 0.61
ARHGEF1-220ENST00000600274 TRIM41Q8WV44 630 aa18.85■□□□□ 0.61
ARHGEF1-220ENST00000600274 CECR2Q9BXF3 1484 aa18.77■□□□□ 0.6
ARHGEF1-220ENST00000600274 PABPN1Q86U42 306 aaKnown RBP eCLIP18.73■□□□□ 0.599e-7■■■□□ 16.5
ARHGEF1-220ENST00000600274 NACADO15069 1562 aa18.71■□□□□ 0.58
ARHGEF1-220ENST00000600274 RB1CC1Q8TDY2 1594 aa18.63■□□□□ 0.57
ARHGEF1-220ENST00000600274 MROH2BQ7Z745 1585 aa18.59■□□□□ 0.57
ARHGEF1-220ENST00000600274 PPARGC1BQ86YN6 1023 aaKnown RBP18.48■□□□□ 0.55
ARHGEF1-220ENST00000600274 WIZO95785 1651 aa18.46■□□□□ 0.54
ARHGEF1-220ENST00000600274 HRCP23327 699 aa18.43■□□□□ 0.54
ARHGEF1-220ENST00000600274 TTBK1Q5TCY1 1321 aaPredicted RBP18.37■□□□□ 0.53
ARHGEF1-220ENST00000600274 TRIM26Q12899 539 aaPredicted RBP18.29■□□□□ 0.52
ARHGEF1-220ENST00000600274 BAZ1AQ9NRL2 1556 aaPredicted RBP18.27■□□□□ 0.51
ARHGEF1-220ENST00000600274 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
ARHGEF1-220ENST00000600274 CCDC88BA6NC98 1476 aa18.13■□□□□ 0.49
ARHGEF1-220ENST00000600274 RANGAP1P46060 587 aaPredicted RBP18.13■□□□□ 0.49
ARHGEF1-220ENST00000600274 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
ARHGEF1-220ENST00000600274 UBTFP17480 764 aaKnown RBP18.11■□□□□ 0.49
ARHGEF1-220ENST00000600274 UNC13AQ9UPW8 1703 aa18.08■□□□□ 0.48
ARHGEF1-220ENST00000600274 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
ARHGEF1-220ENST00000600274 SOGA1O94964 1423 aa17.97■□□□□ 0.47
ARHGEF1-220ENST00000600274 BICRAQ9NZM4 1560 aa17.97■□□□□ 0.47
ARHGEF1-220ENST00000600274 SMARCA2P51531 1590 aa17.95■□□□□ 0.46
ARHGEF1-220ENST00000600274 CSRNP3Q8WYN3 585 aa17.91■□□□□ 0.46
ARHGEF1-220ENST00000600274 RUSC2Q8N2Y8 1516 aa17.88■□□□□ 0.45
ARHGEF1-220ENST00000600274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
ARHGEF1-220ENST00000600274 BAZ1BQ9UIG0 1483 aaKnown RBP17.85■□□□□ 0.45
ARHGEF1-220ENST00000600274 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
ARHGEF1-220ENST00000600274 CCER1Q8TC90 406 aaPredicted RBP17.81■□□□□ 0.44
ARHGEF1-220ENST00000600274 ATAD2BQ9ULI0 1458 aa17.8■□□□□ 0.44
ARHGEF1-220ENST00000600274 EIF4G1Q04637 1599 aaKnown RBP17.78■□□□□ 0.44
ARHGEF1-220ENST00000600274 CEP162Q5TB80 1403 aa17.75■□□□□ 0.43
ARHGEF1-220ENST00000600274 ZEB1P37275 1124 aaPredicted RBP17.71■□□□□ 0.43
ARHGEF1-220ENST00000600274 APLP2Q06481 763 aa17.65■□□□□ 0.42
ARHGEF1-220ENST00000600274 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
ARHGEF1-220ENST00000600274 TNIKQ9UKE5 1360 aa17.62■□□□□ 0.41
ARHGEF1-220ENST00000600274 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
ARHGEF1-220ENST00000600274 GOLGA3Q08378 1498 aa17.58■□□□□ 0.4
ARHGEF1-220ENST00000600274 EEA1Q15075 1411 aa17.55■□□□□ 0.4
ARHGEF1-220ENST00000600274 PEG3Q9GZU2 1588 aa17.53■□□□□ 0.4
ARHGEF1-220ENST00000600274 CLIP1P30622 1438 aa17.5■□□□□ 0.39
ARHGEF1-220ENST00000600274 RAPGEF2Q9Y4G8 1499 aa17.48■□□□□ 0.39
ARHGEF1-220ENST00000600274 CEP164Q9UPV0 1460 aa17.47■□□□□ 0.39
ARHGEF1-220ENST00000600274 ATP1B4Q9UN42 357 aaPredicted RBP17.43■□□□□ 0.38
ARHGEF1-220ENST00000600274 ITGAEP38570 1179 aa17.4■□□□□ 0.38
ARHGEF1-220ENST00000600274 NCAPD3P42695 1498 aa17.39■□□□□ 0.37
ARHGEF1-220ENST00000600274 P3H3Q8IVL6 736 aa17.35■□□□□ 0.37
ARHGEF1-220ENST00000600274 KIF27Q86VH2 1401 aa17.28■□□□□ 0.36
ARHGEF1-220ENST00000600274 CUX1P39880 1505 aa17.28■□□□□ 0.36
ARHGEF1-220ENST00000600274 TOP2BQ02880 1626 aa17.27■□□□□ 0.36
ARHGEF1-220ENST00000600274 VPS8Q8N3P4 1428 aa17.27■□□□□ 0.36
ARHGEF1-220ENST00000600274 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
ARHGEF1-220ENST00000600274 KANK4Q5T7N3 995 aaPredicted RBP17.25■□□□□ 0.35
ARHGEF1-220ENST00000600274 CUX2O14529 1486 aa17.24■□□□□ 0.35
ARHGEF1-220ENST00000600274 CFTRP13569 1480 aa17.23■□□□□ 0.35
ARHGEF1-220ENST00000600274 KIF21BO75037 1637 aa17.23■□□□□ 0.35
ARHGEF1-220ENST00000600274 CADPSQ9ULU8 1353 aa17.22■□□□□ 0.35
ARHGEF1-220ENST00000600274 DIEXFQ68CQ4 756 aaKnown RBP17.22■□□□□ 0.35
ARHGEF1-220ENST00000600274 DNAJC5BQ9UF47 199 aa17.22■□□□□ 0.35
ARHGEF1-220ENST00000600274 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
ARHGEF1-220ENST00000600274 CC2D2AQ9P2K1 1620 aa17.16■□□□□ 0.34
ARHGEF1-220ENST00000600274 NESP48681 1621 aa17.14■□□□□ 0.33
ARHGEF1-220ENST00000600274 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
ARHGEF1-220ENST00000600274 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
ARHGEF1-220ENST00000600274 PRXQ9BXM0 1461 aa17.13■□□□□ 0.33
ARHGEF1-220ENST00000600274 CARMIL1Q5VZK9 1371 aa17.1■□□□□ 0.33
ARHGEF1-220ENST00000600274 FGD5Q6ZNL6 1462 aa17.1■□□□□ 0.33
ARHGEF1-220ENST00000600274 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
ARHGEF1-220ENST00000600274 IGF1RP08069 1367 aa17.09■□□□□ 0.33
ARHGEF1-220ENST00000600274 ARAP1Q96P48 1450 aa17.09■□□□□ 0.33
ARHGEF1-220ENST00000600274 FAM50AQ14320 339 aaKnown RBP17.08■□□□□ 0.33
ARHGEF1-220ENST00000600274 FANCD2Q9BXW9 1451 aa17.08■□□□□ 0.32
ARHGEF1-220ENST00000600274 RAD54L2Q9Y4B4 1467 aa17.07■□□□□ 0.32
ARHGEF1-220ENST00000600274 ZNF316A6NFI3 1004 aaPredicted RBP17.05■□□□□ 0.32
ARHGEF1-220ENST00000600274 ARID3CA6NKF2 412 aa17.01■□□□□ 0.31
ARHGEF1-220ENST00000600274 TDRD9Q8NDG6 1382 aaKnown RBP17■□□□□ 0.31
ARHGEF1-220ENST00000600274 ERICH3Q5RHP9 1530 aa17■□□□□ 0.31
ARHGEF1-220ENST00000600274 ARHGAP35Q9NRY4 1499 aa16.99■□□□□ 0.31
ARHGEF1-220ENST00000600274 GTF3C3Q9Y5Q9 886 aa16.94■□□□□ 0.3
ARHGEF1-220ENST00000600274 NEUROD1Q13562 356 aa16.93■□□□□ 0.3
ARHGEF1-220ENST00000600274 FHOD3Q2V2M9 1422 aa16.92■□□□□ 0.3
ARHGEF1-220ENST00000600274 CENPBP07199 599 aaPredicted RBP16.9■□□□□ 0.3
ARHGEF1-220ENST00000600274 CCNB3Q8WWL7 1395 aa16.9■□□□□ 0.3
ARHGEF1-220ENST00000600274 POLA1P09884 1462 aaPredicted RBP16.89■□□□□ 0.29
ARHGEF1-220ENST00000600274 MIER1Q8N108 512 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms