RNA–Protein interactions for RNA: ENST00000283415.3

LPCAT1-201, Transcript of lysophosphatidylcholine acyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LPCAT1, Length 3,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT1-201ENST00000283415 NISCHQ9Y2I1 1504 aa29.01■■■□□ 2.23
LPCAT1-201ENST00000283415 CCDC180Q9P1Z9 1646 aa25.02■■□□□ 1.6
LPCAT1-201ENST00000283415 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
LPCAT1-201ENST00000283415 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
LPCAT1-201ENST00000283415 SHROOM4Q9ULL8 1493 aa24.21■■□□□ 1.47
LPCAT1-201ENST00000283415 DCAF1Q9Y4B6 1507 aa24.14■■□□□ 1.45
LPCAT1-201ENST00000283415 SUPT5HO00267 1087 aaKnown RBP24.04■■□□□ 1.44
LPCAT1-201ENST00000283415 MYO15BQ96JP2 1530 aa23.51■■□□□ 1.35
LPCAT1-201ENST00000283415 ABCC9O60706 1549 aa23.28■■□□□ 1.32
LPCAT1-201ENST00000283415 CHIC1Q5VXU3 224 aa23.06■■□□□ 1.28
LPCAT1-201ENST00000283415 EHMT2Q96KQ7 1210 aa23.03■■□□□ 1.28
LPCAT1-201ENST00000283415 NACADO15069 1562 aa22.9■■□□□ 1.26
LPCAT1-201ENST00000283415 SCRIBQ14160 1630 aa22.9■■□□□ 1.26
LPCAT1-201ENST00000283415 RSF1Q96T23 1441 aaPredicted RBP22.81■■□□□ 1.24
LPCAT1-201ENST00000283415 RB1CC1Q8TDY2 1594 aa22.7■■□□□ 1.22
LPCAT1-201ENST00000283415 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
LPCAT1-201ENST00000283415 PCGF6Q9BYE7 350 aa22.55■■□□□ 1.2
LPCAT1-201ENST00000283415 EIF4G1Q04637 1599 aaKnown RBP22.49■■□□□ 1.19
LPCAT1-201ENST00000283415 MROH2BQ7Z745 1585 aa22.45■■□□□ 1.18
LPCAT1-201ENST00000283415 UNC13AQ9UPW8 1703 aa22.45■■□□□ 1.18
LPCAT1-201ENST00000283415 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
LPCAT1-201ENST00000283415 BAZ1AQ9NRL2 1556 aaPredicted RBP22.4■■□□□ 1.18
LPCAT1-201ENST00000283415 WIZO95785 1651 aa22.37■■□□□ 1.17
LPCAT1-201ENST00000283415 LOC105371045A0A1W2PR82 267 aa22.26■■□□□ 1.15
LPCAT1-201ENST00000283415 HRCP23327 699 aa22.23■■□□□ 1.15
LPCAT1-201ENST00000283415 SMARCA4P51532 1647 aa22.15■■□□□ 1.14
LPCAT1-201ENST00000283415 TTBK1Q5TCY1 1321 aaPredicted RBP22.15■■□□□ 1.14
LPCAT1-201ENST00000283415 TOP2AP11388 1531 aaKnown RBP22.11■■□□□ 1.13
LPCAT1-201ENST00000283415 PPARGC1BQ86YN6 1023 aaKnown RBP22.07■■□□□ 1.12
LPCAT1-201ENST00000283415 BICRAQ9NZM4 1560 aa22.03■■□□□ 1.12
LPCAT1-201ENST00000283415 PEG3Q9GZU2 1588 aa22.01■■□□□ 1.11
LPCAT1-201ENST00000283415 SMARCA2P51531 1590 aa22■■□□□ 1.11
LPCAT1-201ENST00000283415 TRIM41Q8WV44 630 aa21.97■■□□□ 1.11
LPCAT1-201ENST00000283415 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
LPCAT1-201ENST00000283415 TRIM26Q12899 539 aaPredicted RBP21.78■■□□□ 1.08
LPCAT1-201ENST00000283415 RANGAP1P46060 587 aaPredicted RBP21.72■■□□□ 1.07
LPCAT1-201ENST00000283415 ABCC8Q09428 1581 aa21.67■■□□□ 1.06
LPCAT1-201ENST00000283415 WRNQ14191 1432 aaPredicted RBP eCLIP21.55■■□□□ 1.04
LPCAT1-201ENST00000283415 EEA1Q15075 1411 aa21.46■■□□□ 1.03
LPCAT1-201ENST00000283415 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.02
LPCAT1-201ENST00000283415 SYNJ1O43426 1573 aa21.42■■□□□ 1.02
LPCAT1-201ENST00000283415 SOGA1O94964 1423 aa21.39■■□□□ 1.02
LPCAT1-201ENST00000283415 KIF21BO75037 1637 aa21.38■■□□□ 1.01
LPCAT1-201ENST00000283415 RUSC2Q8N2Y8 1516 aa21.34■■□□□ 1.01
LPCAT1-201ENST00000283415 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
LPCAT1-201ENST00000283415 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.016e-9■■□□□ 14
LPCAT1-201ENST00000283415 UBTFP17480 764 aaKnown RBP21.33■■□□□ 1.01
LPCAT1-201ENST00000283415 BIVM-ERCC5R4GMW8 1640 aa21.32■■□□□ 1
LPCAT1-201ENST00000283415 CCER1Q8TC90 406 aaPredicted RBP21.28■■□□□ 1
LPCAT1-201ENST00000283415 CEP162Q5TB80 1403 aa21.27■■□□□ 1
LPCAT1-201ENST00000283415 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
LPCAT1-201ENST00000283415 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
LPCAT1-201ENST00000283415 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
LPCAT1-201ENST00000283415 BAZ1BQ9UIG0 1483 aaKnown RBP21.23■□□□□ 0.99
LPCAT1-201ENST00000283415 GOLGA3Q08378 1498 aa21.19■□□□□ 0.98
LPCAT1-201ENST00000283415 PRDM2Q13029 1718 aa21.17■□□□□ 0.98
LPCAT1-201ENST00000283415 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.15■□□□□ 0.98
LPCAT1-201ENST00000283415 NCAPD3P42695 1498 aa21.13■□□□□ 0.97
LPCAT1-201ENST00000283415 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
LPCAT1-201ENST00000283415 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
LPCAT1-201ENST00000283415 APLP2Q06481 763 aa21.05■□□□□ 0.96
LPCAT1-201ENST00000283415 ERICH3Q5RHP9 1530 aa21.02■□□□□ 0.96
LPCAT1-201ENST00000283415 YTHDC1Q96MU7 727 aaKnown RBP20.99■□□□□ 0.95
LPCAT1-201ENST00000283415 PRXQ9BXM0 1461 aa20.95■□□□□ 0.94
LPCAT1-201ENST00000283415 CUX1P39880 1505 aa20.95■□□□□ 0.94
LPCAT1-201ENST00000283415 RAPGEF2Q9Y4G8 1499 aa20.93■□□□□ 0.94
LPCAT1-201ENST00000283415 CFTRP13569 1480 aa20.93■□□□□ 0.94
LPCAT1-201ENST00000283415 HNRNPUL2Q1KMD3 747 aaKnown RBP20.93■□□□□ 0.94
LPCAT1-201ENST00000283415 ATP1B4Q9UN42 357 aaPredicted RBP20.87■□□□□ 0.93
LPCAT1-201ENST00000283415 VPS8Q8N3P4 1428 aa20.87■□□□□ 0.93
LPCAT1-201ENST00000283415 CLIP1P30622 1438 aa20.84■□□□□ 0.93
LPCAT1-201ENST00000283415 ITGAEP38570 1179 aa20.78■□□□□ 0.92
LPCAT1-201ENST00000283415 ARAP1Q96P48 1450 aa20.77■□□□□ 0.92
LPCAT1-201ENST00000283415 CENPBP07199 599 aaPredicted RBP20.69■□□□□ 0.9
LPCAT1-201ENST00000283415 CUX2O14529 1486 aa20.59■□□□□ 0.89
LPCAT1-201ENST00000283415 KIF27Q86VH2 1401 aa20.58■□□□□ 0.88
LPCAT1-201ENST00000283415 DIEXFQ68CQ4 756 aaKnown RBP20.57■□□□□ 0.88
LPCAT1-201ENST00000283415 MAP3K1Q13233 1512 aa20.55■□□□□ 0.88
LPCAT1-201ENST00000283415 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
LPCAT1-201ENST00000283415 CC2D2AQ9P2K1 1620 aa20.54■□□□□ 0.88
LPCAT1-201ENST00000283415 RRBP1Q9P2E9 1410 aaKnown RBP20.53■□□□□ 0.88
LPCAT1-201ENST00000283415 SCAF1Q9H7N4 1312 aaKnown RBP20.53■□□□□ 0.88
LPCAT1-201ENST00000283415 WDR97A6NE52 1622 aa20.52■□□□□ 0.87
LPCAT1-201ENST00000283415 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
LPCAT1-201ENST00000283415 PELP1Q8IZL8 1130 aaKnown RBP20.5■□□□□ 0.87
LPCAT1-201ENST00000283415 GTF3C3Q9Y5Q9 886 aa20.5■□□□□ 0.87
LPCAT1-201ENST00000283415 IGF1RP08069 1367 aa20.45■□□□□ 0.86
LPCAT1-201ENST00000283415 CFAP43Q8NDM7 1665 aa20.45■□□□□ 0.86
LPCAT1-201ENST00000283415 FGD5Q6ZNL6 1462 aa20.43■□□□□ 0.86
LPCAT1-201ENST00000283415 DNMBPQ6XZF7 1577 aa20.42■□□□□ 0.86
LPCAT1-201ENST00000283415 TIAM1Q13009 1591 aa20.39■□□□□ 0.85
LPCAT1-201ENST00000283415 ABCA10Q8WWZ4 1543 aa20.37■□□□□ 0.85
LPCAT1-201ENST00000283415 NEUROD1Q13562 356 aa20.36■□□□□ 0.85
LPCAT1-201ENST00000283415 CUL7Q14999 1698 aa20.34■□□□□ 0.85
LPCAT1-201ENST00000283415 CTTNBP2Q8WZ74 1663 aa20.34■□□□□ 0.85
LPCAT1-201ENST00000283415 CLSPNQ9HAW4 1339 aa20.33■□□□□ 0.85
LPCAT1-201ENST00000283415 P3H3Q8IVL6 736 aa20.31■□□□□ 0.84
LPCAT1-201ENST00000283415 DHX57Q6P158 1386 aaKnown RBP20.3■□□□□ 0.84
LPCAT1-201ENST00000283415 FANCD2Q9BXW9 1451 aa20.3■□□□□ 0.84
LPCAT1-201ENST00000283415 ACIN1Q9UKV3 1341 aaKnown RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms