Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
PCDH9Q9HC56 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDH9Q9HC56 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PCDH9Q9HC56 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.23■■□□□ 1.79
PCDH9Q9HC56 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDH9Q9HC56 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PCDH9Q9HC56 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDH9Q9HC56 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PCDH9Q9HC56 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
PCDH9Q9HC56 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.21■■□□□ 1.79
PCDH9Q9HC56 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
PCDH9Q9HC56 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PCDH9Q9HC56 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.2■■□□□ 1.79
PCDH9Q9HC56 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDH9Q9HC56 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PCDH9Q9HC56 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDH9Q9HC56 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PCDH9Q9HC56 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDH9Q9HC56 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
PCDH9Q9HC56 AP002414.2-202ENST00000590929 1450 ntBASIC26.17■■□□□ 1.78
PCDH9Q9HC56 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
PCDH9Q9HC56 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDH9Q9HC56 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.16■■□□□ 1.78
PCDH9Q9HC56 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDH9Q9HC56 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDH9Q9HC56 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDH9Q9HC56 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 DUX4L29-201ENST00000425409 679 ntBASIC26.15■■□□□ 1.78
PCDH9Q9HC56 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.15■■□□□ 1.78
PCDH9Q9HC56 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDH9Q9HC56 AC021231.2-201ENST00000594613 730 ntBASIC26.14■■□□□ 1.78
PCDH9Q9HC56 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDH9Q9HC56 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.14■■□□□ 1.77
PCDH9Q9HC56 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDH9Q9HC56 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.13■■□□□ 1.77
PCDH9Q9HC56 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.12■■□□□ 1.77
PCDH9Q9HC56 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
PCDH9Q9HC56 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PCDH9Q9HC56 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.11■■□□□ 1.77
PCDH9Q9HC56 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDH9Q9HC56 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
PCDH9Q9HC56 AC135983.2-203ENST00000454486 1613 ntBASIC26.1■■□□□ 1.77
PCDH9Q9HC56 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
PCDH9Q9HC56 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.1■■□□□ 1.77
PCDH9Q9HC56 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
PCDH9Q9HC56 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.1■■□□□ 1.77
PCDH9Q9HC56 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
PCDH9Q9HC56 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PCDH9Q9HC56 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDH9Q9HC56 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.08■■□□□ 1.76
PCDH9Q9HC56 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
PCDH9Q9HC56 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDH9Q9HC56 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.07■■□□□ 1.76
PCDH9Q9HC56 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.07■■□□□ 1.76
PCDH9Q9HC56 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.06■■□□□ 1.76
PCDH9Q9HC56 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.06■■□□□ 1.76
PCDH9Q9HC56 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDH9Q9HC56 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDH9Q9HC56 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.06■■□□□ 1.76
PCDH9Q9HC56 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
PCDH9Q9HC56 LINC00273-201ENST00000539813 1452 ntBASIC26.05■■□□□ 1.76
PCDH9Q9HC56 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDH9Q9HC56 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.05■■□□□ 1.76
PCDH9Q9HC56 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PCDH9Q9HC56 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDH9Q9HC56 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.04■■□□□ 1.76
PCDH9Q9HC56 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDH9Q9HC56 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDH9Q9HC56 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
PCDH9Q9HC56 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDH9Q9HC56 WHAMMP2-203ENST00000563942 1603 ntBASIC26.03■■□□□ 1.76
PCDH9Q9HC56 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDH9Q9HC56 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
PCDH9Q9HC56 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms