Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC27.27■■□□□ 1.96
DDX53Q86TM3 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX53Q86TM3 AC012354.3-201ENST00000623734 483 ntBASIC27.27■■□□□ 1.96
DDX53Q86TM3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX53Q86TM3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
DDX53Q86TM3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC27.27■■□□□ 1.96
DDX53Q86TM3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.26■■□□□ 1.95
DDX53Q86TM3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
DDX53Q86TM3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
DDX53Q86TM3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
DDX53Q86TM3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
DDX53Q86TM3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC27.25■■□□□ 1.95
DDX53Q86TM3 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
DDX53Q86TM3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
DDX53Q86TM3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
DDX53Q86TM3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
DDX53Q86TM3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC27.22■■□□□ 1.95
DDX53Q86TM3 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX53Q86TM3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC27.21■■□□□ 1.95
DDX53Q86TM3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
DDX53Q86TM3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
DDX53Q86TM3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
DDX53Q86TM3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.19■■□□□ 1.94
DDX53Q86TM3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
DDX53Q86TM3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC27.19■■□□□ 1.94
DDX53Q86TM3 AC092296.2-201ENST00000589470 999 ntBASIC27.19■■□□□ 1.94
DDX53Q86TM3 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
DDX53Q86TM3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
DDX53Q86TM3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC27.18■■□□□ 1.94
DDX53Q86TM3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
DDX53Q86TM3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
DDX53Q86TM3 U85056.1-201ENST00000616429 682 ntBASIC27.18■■□□□ 1.94
DDX53Q86TM3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.17■■□□□ 1.94
DDX53Q86TM3 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
DDX53Q86TM3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
DDX53Q86TM3 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
DDX53Q86TM3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
DDX53Q86TM3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
DDX53Q86TM3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC27.16■■□□□ 1.94
DDX53Q86TM3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC27.16■■□□□ 1.94
DDX53Q86TM3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC27.16■■□□□ 1.94
DDX53Q86TM3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
DDX53Q86TM3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC27.16■■□□□ 1.94
DDX53Q86TM3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX53Q86TM3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
DDX53Q86TM3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
DDX53Q86TM3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
DDX53Q86TM3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
DDX53Q86TM3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
DDX53Q86TM3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
DDX53Q86TM3 ECEL1P2-201ENST00000461596 1295 ntBASIC27.13■■□□□ 1.93
DDX53Q86TM3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC27.13■■□□□ 1.93
DDX53Q86TM3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX53Q86TM3 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX53Q86TM3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
DDX53Q86TM3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC27.12■■□□□ 1.93
DDX53Q86TM3 AC126177.7-201ENST00000547904 679 ntBASIC27.12■■□□□ 1.93
DDX53Q86TM3 AC018358.1-201ENST00000631079 1402 ntBASIC27.12■■□□□ 1.93
DDX53Q86TM3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
DDX53Q86TM3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
DDX53Q86TM3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
DDX53Q86TM3 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
DDX53Q86TM3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX53Q86TM3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC27.1■■□□□ 1.93
DDX53Q86TM3 AP004833.2-201ENST00000532228 1454 ntBASIC27.1■■□□□ 1.93
DDX53Q86TM3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
DDX53Q86TM3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
DDX53Q86TM3 AL033527.3-201ENST00000566366 1196 ntBASIC27.09■■□□□ 1.93
DDX53Q86TM3 ST7-AS1-201ENST00000456775 1889 ntBASIC27.08■■□□□ 1.93
DDX53Q86TM3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
DDX53Q86TM3 MED25-210ENST00000612854 801 ntTSL 5 BASIC27.08■■□□□ 1.93
DDX53Q86TM3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
DDX53Q86TM3 MED25-214ENST00000622402 642 ntTSL 5 BASIC27.08■■□□□ 1.93
DDX53Q86TM3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
DDX53Q86TM3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.07■■□□□ 1.92
DDX53Q86TM3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC27.07■■□□□ 1.92
DDX53Q86TM3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
DDX53Q86TM3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
DDX53Q86TM3 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
DDX53Q86TM3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
DDX53Q86TM3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
DDX53Q86TM3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC27.05■■□□□ 1.92
DDX53Q86TM3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
DDX53Q86TM3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC27.05■■□□□ 1.92
DDX53Q86TM3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
DDX53Q86TM3 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
DDX53Q86TM3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC27.04■■□□□ 1.92
DDX53Q86TM3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
DDX53Q86TM3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.04■■□□□ 1.92
DDX53Q86TM3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
DDX53Q86TM3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.04■■□□□ 1.92
DDX53Q86TM3 KRT18P60-201ENST00000312876 1297 ntBASIC27.02■■□□□ 1.92
DDX53Q86TM3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC27.01■■□□□ 1.91
DDX53Q86TM3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
DDX53Q86TM3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC27■■□□□ 1.91
DDX53Q86TM3 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC27■■□□□ 1.91
DDX53Q86TM3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27■■□□□ 1.91
DDX53Q86TM3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.99■■□□□ 1.91
DDX53Q86TM3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.99■■□□□ 1.91
DDX53Q86TM3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms