Protein–RNA interactions for Protein: Q7RTT3

SSX9, Protein SSX9, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX9Q7RTT3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SSX9Q7RTT3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SSX9Q7RTT3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SSX9Q7RTT3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.66■□□□□ 0.9
SSX9Q7RTT3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.66■□□□□ 0.9
SSX9Q7RTT3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.66■□□□□ 0.9
SSX9Q7RTT3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.66■□□□□ 0.9
SSX9Q7RTT3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 AC005559.1-201ENST00000589661 871 ntBASIC20.65■□□□□ 0.9
SSX9Q7RTT3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SSX9Q7RTT3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
SSX9Q7RTT3 SUZ12P1-203ENST00000578195 985 ntBASIC20.64■□□□□ 0.89
SSX9Q7RTT3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC20.64■□□□□ 0.89
SSX9Q7RTT3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SSX9Q7RTT3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SSX9Q7RTT3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.62■□□□□ 0.89
SSX9Q7RTT3 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SSX9Q7RTT3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.61■□□□□ 0.89
SSX9Q7RTT3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 LINC01003-201ENST00000564834 1764 ntBASIC20.6■□□□□ 0.89
SSX9Q7RTT3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SSX9Q7RTT3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SSX9Q7RTT3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX9Q7RTT3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.58■□□□□ 0.89
SSX9Q7RTT3 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SSX9Q7RTT3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.58■□□□□ 0.89
SSX9Q7RTT3 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
SSX9Q7RTT3 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SSX9Q7RTT3 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.57■□□□□ 0.88
SSX9Q7RTT3 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
SSX9Q7RTT3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
SSX9Q7RTT3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.56■□□□□ 0.88
SSX9Q7RTT3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SSX9Q7RTT3 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX9Q7RTT3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.55■□□□□ 0.88
SSX9Q7RTT3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX9Q7RTT3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX9Q7RTT3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SSX9Q7RTT3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.54■□□□□ 0.88
SSX9Q7RTT3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 AC108673.1-201ENST00000510422 1159 ntBASIC20.53■□□□□ 0.88
SSX9Q7RTT3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.53■□□□□ 0.88
SSX9Q7RTT3 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms