Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.292e-9■■■■□ 25.1
CDC40O60508 WDR6-203ENST00000419837 538 ntTSL 410.28□□□□□ -0.762e-9■■■■□ 25.1
CDC40O60508 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.072e-6■■■■□ 25
CDC40O60508 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.16□□□□□ -0.142e-6■■■■□ 25
CDC40O60508 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■■■■□ 25
CDC40O60508 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.492e-6■■■■□ 25
CDC40O60508 ANKMY1-214ENST00000418708 945 ntTSL 318.86■□□□□ 0.613e-7■■■■□ 24.7
CDC40O60508 CAPN15-205ENST00000567216 3174 ntTSL 1 (best)18.02■□□□□ 0.483e-7■■■■□ 24.7
CDC40O60508 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.6□□□□□ -1.355e-7■■■■□ 24.7
CDC40O60508 MACF1-205ENST00000372925 14496 ntTSL 56.13□□□□□ -1.435e-7■■■■□ 24.7
CDC40O60508 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.58□□□□□ -1.685e-7■■■■□ 24.7
CDC40O60508 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.745e-7■■■■□ 24.7
CDC40O60508 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.745e-7■■■■□ 24.7
CDC40O60508 VAV2-205ENST00000486113 523 ntTSL 211.67□□□□□ -0.548e-7■■■■□ 24.6
CDC40O60508 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.997e-7■■■■□ 24.4
CDC40O60508 LRP1-206ENST00000554118 418 ntTSL 27.04□□□□□ -1.287e-7■■■■□ 24.4
CDC40O60508 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.63■□□□□ 0.094e-8■■■■□ 24.3
CDC40O60508 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.394e-8■■■■□ 24.3
CDC40O60508 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC12.18□□□□□ -0.464e-8■■■■□ 24.3
CDC40O60508 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.534e-8■■■■□ 24.3
CDC40O60508 GDPD5-206ENST00000527820 3211 ntTSL 1 (best)11.73□□□□□ -0.534e-8■■■■□ 24.3
CDC40O60508 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC11.54□□□□□ -0.564e-8■■■■□ 24.3
CDC40O60508 GDPD5-205ENST00000527322 1000 ntTSL 1 (best)10.47□□□□□ -0.734e-8■■■■□ 24.3
CDC40O60508 TMEM98-201ENST00000261713 826 ntTSL 322.98■■□□□ 1.271e-6■■■■□ 24.1
CDC40O60508 TMEM98-203ENST00000395149 808 ntTSL 222.54■■□□□ 1.21e-6■■■■□ 24.1
CDC40O60508 DPH1-213ENST00000575667 1644 ntTSL 1 (best)21.67■■□□□ 1.061e-6■■■■□ 24.1
CDC40O60508 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.951e-6■■■■□ 24.1
CDC40O60508 DPH1-206ENST00000571418 1733 ntAPPRIS ALT2 TSL 220.65■□□□□ 0.91e-6■■■■□ 24.1
CDC40O60508 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.29■□□□□ 0.841e-6■■■■□ 24.1
CDC40O60508 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.781e-6■■■■□ 24.1
CDC40O60508 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.8■□□□□ 0.761e-6■■■■□ 24.1
CDC40O60508 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.641e-6■■■■□ 24.1
CDC40O60508 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.51e-6■■■■□ 24.1
CDC40O60508 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.471e-6■■■■□ 24.1
CDC40O60508 DPH1-208ENST00000572214 946 ntTSL 517.72■□□□□ 0.431e-6■■■■□ 24.1
CDC40O60508 DPH1-215ENST00000576129 991 ntTSL 217.59■□□□□ 0.411e-6■■■■□ 24.1
CDC40O60508 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.42e-12■■■■□ 24.1
CDC40O60508 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.241e-7■■■■□ 24.1
CDC40O60508 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.111e-7■■■■□ 24.1
CDC40O60508 SHANK2-207ENST00000425049 557 ntTSL 415.38■□□□□ 0.051e-6■■■■□ 24.1
CDC40O60508 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.22■□□□□ 0.031e-6■■■■□ 24.1
CDC40O60508 SHANK2-213ENST00000460048 736 ntTSL 515.19■□□□□ 0.021e-6■■■■□ 24.1
CDC40O60508 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.11e-6■■■■□ 24.1
CDC40O60508 SLC35C2-208ENST00000481809 872 ntTSL 514.31□□□□□ -0.121e-6■■■■□ 24.1
CDC40O60508 SLC35C2-205ENST00000420518 588 ntTSL 314.24□□□□□ -0.131e-6■■■■□ 24.1
CDC40O60508 SLC35C2-210ENST00000484318 971 ntTSL 514.02□□□□□ -0.171e-6■■■■□ 24.1
CDC40O60508 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.83□□□□□ -0.361e-6■■■■□ 24.1
CDC40O60508 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC12.81□□□□□ -0.361e-6■■■■□ 24.1
CDC40O60508 SLC35C2-206ENST00000424568 731 ntTSL 212.41□□□□□ -0.421e-6■■■■□ 24.1
CDC40O60508 NGEF-206ENST00000420650 519 ntTSL 512.35□□□□□ -0.431e-6■■■■□ 24.1
CDC40O60508 INPP5D-204ENST00000445964 4845 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.51e-6■■■■□ 24.1
CDC40O60508 TMEM98-207ENST00000582227 424 ntTSL 511.89□□□□□ -0.511e-6■■■■□ 24.1
CDC40O60508 TMEM98-204ENST00000439138 896 ntTSL 311.78□□□□□ -0.521e-6■■■■□ 24.1
CDC40O60508 DPH1-204ENST00000570833 558 ntTSL 511.67□□□□□ -0.541e-6■■■■□ 24.1
CDC40O60508 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.541e-7■■■■□ 24.1
CDC40O60508 NGEF-205ENST00000416114 667 ntTSL 310.91□□□□□ -0.661e-6■■■■□ 24.1
CDC40O60508 INPP5D-202ENST00000415617 3628 ntTSL 510.51□□□□□ -0.731e-6■■■■□ 24.1
CDC40O60508 INPP5D-208ENST00000472517 527 ntTSL 37.14□□□□□ -1.271e-6■■■■□ 24.1
CDC40O60508 INPP5D-212ENST00000493078 401 ntTSL 57.12□□□□□ -1.271e-6■■■■□ 24.1
CDC40O60508 RBL2-202ENST00000379935 4467 ntTSL 1 (best)5.82□□□□□ -1.482e-12■■■■□ 24.1
CDC40O60508 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.09■□□□□ 0.491e-6■■■■□ 24.1
CDC40O60508 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.11e-6■■■■□ 24.1
CDC40O60508 RPH3AL-205ENST00000570893 594 ntTSL 314.97□□□□□ -0.011e-6■■■■□ 24.1
CDC40O60508 RPH3AL-219ENST00000576001 647 ntTSL 314.35□□□□□ -0.111e-6■■■■□ 24.1
CDC40O60508 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.21e-6■■■■□ 24.1
CDC40O60508 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.75□□□□□ -0.211e-6■■■■□ 24.1
CDC40O60508 RPH3AL-206ENST00000570954 568 ntTSL 411.14□□□□□ -0.631e-6■■■■□ 24.1
CDC40O60508 AKT1-212ENST00000555380 534 ntTSL 410.52□□□□□ -0.732e-6■■■■□ 24.1
CDC40O60508 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.11e-6■■■■□ 24
CDC40O60508 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.73□□□□□ -0.211e-6■■■■□ 24
CDC40O60508 NOL4L-204ENST00000375677 541 ntTSL 310.84□□□□□ -0.671e-6■■■■□ 24
CDC40O60508 CBX4-203ENST00000494546 432 ntTSL 330.71■■■□□ 2.511e-7■■■■□ 23.9
CDC40O60508 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.34■■□□□ 1.811e-7■■■■□ 23.9
CDC40O60508 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.571e-7■■■■□ 23.9
CDC40O60508 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.62■□□□□ 0.258e-7■■■■□ 23.9
CDC40O60508 MSI2-210ENST00000579505 577 ntTSL 316.28■□□□□ 0.28e-7■■■■□ 23.9
CDC40O60508 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.128e-7■■■■□ 23.9
CDC40O60508 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.7□□□□□ -0.068e-7■■■■□ 23.9
CDC40O60508 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.213e-6■■■■□ 23.9
CDC40O60508 CRIM1-203ENST00000426856 667 ntTSL 314.19□□□□□ -0.143e-6■■■■□ 23.9
CDC40O60508 CRIM1-204ENST00000428774 700 ntTSL 39.86□□□□□ -0.833e-6■■■■□ 23.9
CDC40O60508 CRIM1-206ENST00000477491 311 ntTSL 26.06□□□□□ -1.443e-6■■■■□ 23.9
CDC40O60508 CRIM1-205ENST00000473403 386 ntTSL 33.98□□□□□ -1.773e-6■■■■□ 23.9
CDC40O60508 CRIM1-208ENST00000497236 240 ntTSL 32.62□□□□□ -1.993e-6■■■■□ 23.9
CDC40O60508 RTEL1-210ENST00000496816 2222 ntTSL 1 (best)17.59■□□□□ 0.418e-9■■■■□ 23.8
CDC40O60508 RTEL1-TNFRSF6B-204ENST00000496281 5314 ntTSL 217.16■□□□□ 0.348e-9■■■■□ 23.8
CDC40O60508 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.94■□□□□ 0.38e-9■■■■□ 23.8
CDC40O60508 RTEL1-TNFRSF6B-201ENST00000480273 5751 ntTSL 216.75■□□□□ 0.278e-9■■■■□ 23.8
CDC40O60508 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.61□□□□□ -0.398e-9■■■■□ 23.8
CDC40O60508 AMER1-201ENST00000330258 8443 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.928e-9■■■■□ 23.8
CDC40O60508 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.35■□□□□ 0.052e-7■■■■□ 23.8
CDC40O60508 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.85□□□□□ -0.032e-7■■■■□ 23.8
CDC40O60508 EXOC3L4-202ENST00000559116 460 ntTSL 515.38■□□□□ 0.053e-7■■■■□ 23.8
CDC40O60508 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.234e-6■■■■□ 23.6
CDC40O60508 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.03■□□□□ -04e-6■■■■□ 23.6
CDC40O60508 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.9□□□□□ -0.184e-6■■■■□ 23.6
CDC40O60508 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.41□□□□□ -0.264e-6■■■■□ 23.6
CDC40O60508 ANXA6-203ENST00000517486 562 ntTSL 512.17□□□□□ -0.464e-6■■■■□ 23.6
CDC40O60508 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.012e-6■■■■□ 23.6
CDC40O60508 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.02■□□□□ 0.472e-6■■■■□ 23.6
Retrieved 100 of 5,364 protein–RNA pairs in 535.9 ms