RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 NISCHQ9Y2I1 1504 aa81.58■■■■■ 10.65
CBX4-203ENST00000494546 CCDC180Q9P1Z9 1646 aa72.73■■■■■ 9.23
CBX4-203ENST00000494546 ABCC9O60706 1549 aa71.94■■■■■ 9.11
CBX4-203ENST00000494546 RB1CC1Q8TDY2 1594 aa68.83■■■■■ 8.61
CBX4-203ENST00000494546 DCAF8L2P0C7V8 631 aa68.63■■■■■ 8.58
CBX4-203ENST00000494546 NACADO15069 1562 aa68.58■■■■■ 8.57
CBX4-203ENST00000494546 MYO15BQ96JP2 1530 aa67.9■■■■■ 8.46
CBX4-203ENST00000494546 ZCCHC6Q5VYS8 1495 aaKnown RBP67.82■■■■■ 8.45
CBX4-203ENST00000494546 DCAF1Q9Y4B6 1507 aa67.4■■■■■ 8.38
CBX4-203ENST00000494546 UNC13AQ9UPW8 1703 aa67.22■■■■■ 8.35
CBX4-203ENST00000494546 PABPN1Q86U42 306 aaKnown RBP eCLIP67.17■■■■■ 8.34
CBX4-203ENST00000494546 BICRAQ9NZM4 1560 aa66.76■■■■■ 8.28
CBX4-203ENST00000494546 DNAJC5BQ9UF47 199 aa66.61■■■■■ 8.25
CBX4-203ENST00000494546 SCRIBQ14160 1630 aa66.44■■■■■ 8.23
CBX4-203ENST00000494546 SHROOM4Q9ULL8 1493 aa65.94■■■■■ 8.15
CBX4-203ENST00000494546 EIF4G1Q04637 1599 aaKnown RBP65.08■■■■■ 8.01
CBX4-203ENST00000494546 CC2D2AQ9P2K1 1620 aa64.98■■■■■ 7.99
CBX4-203ENST00000494546 CECR2Q9BXF3 1484 aa64.67■■■■■ 7.94
CBX4-203ENST00000494546 SMARCA4P51532 1647 aa63.44■■■■■ 7.75
CBX4-203ENST00000494546 NCAPD3P42695 1498 aa63.31■■■■■ 7.73
CBX4-203ENST00000494546 ATAD2BQ9ULI0 1458 aa63.27■■■■■ 7.72
CBX4-203ENST00000494546 BAZ1AQ9NRL2 1556 aaPredicted RBP63.27■■■■■ 7.72
CBX4-203ENST00000494546 SMARCA2P51531 1590 aa63.13■■■■■ 7.7
CBX4-203ENST00000494546 HMGXB3Q12766 1538 aa62.91■■■■■ 7.66
CBX4-203ENST00000494546 MROH2BQ7Z745 1585 aa62.9■■■■■ 7.66
CBX4-203ENST00000494546 PEG3Q9GZU2 1588 aa62.76■■■■■ 7.64
CBX4-203ENST00000494546 BAZ1BQ9UIG0 1483 aaKnown RBP62.75■■■■■ 7.64
CBX4-203ENST00000494546 WIZO95785 1651 aa62.18■■■■■ 7.54
CBX4-203ENST00000494546 ERCC6Q03468 1493 aa62.06■■■■■ 7.52
CBX4-203ENST00000494546 NESP48681 1621 aa62.06■■■■■ 7.52
CBX4-203ENST00000494546 RSF1Q96T23 1441 aaPredicted RBP61.95■■■■■ 7.51
CBX4-203ENST00000494546 LAMC3Q9Y6N6 1575 aa61.73■■■■■ 7.47
CBX4-203ENST00000494546 CUX2O14529 1486 aa61.55■■■■■ 7.44
CBX4-203ENST00000494546 CADPSQ9ULU8 1353 aa61.47■■■■■ 7.43
CBX4-203ENST00000494546 TOP2AP11388 1531 aaKnown RBP61.46■■■■■ 7.43
CBX4-203ENST00000494546 PDS5BQ9NTI5 1447 aa61.38■■■■■ 7.42
CBX4-203ENST00000494546 KIF21AQ7Z4S6 1674 aa61.24■■■■■ 7.39
CBX4-203ENST00000494546 THOC2Q8NI27 1593 aaKnown RBP61.18■■■■■ 7.38
CBX4-203ENST00000494546 CFTRP13569 1480 aa60.94■■■■■ 7.35
CBX4-203ENST00000494546 MRC2Q9UBG0 1479 aa60.79■■■■■ 7.32
CBX4-203ENST00000494546 CCDC88BA6NC98 1476 aa60.78■■■■■ 7.32
CBX4-203ENST00000494546 FANCD2Q9BXW9 1451 aa60.78■■■■■ 7.32
CBX4-203ENST00000494546 CEP164Q9UPV0 1460 aa60.75■■■■■ 7.32
CBX4-203ENST00000494546 WDR62O43379 1518 aa60.57■■■■■ 7.29
CBX4-203ENST00000494546 DNAJC5Q9H3Z4 198 aa60.45■■■■■ 7.27
CBX4-203ENST00000494546 PRDM2Q13029 1718 aa60.34■■■■■ 7.25
CBX4-203ENST00000494546 URB2Q14146 1524 aaKnown RBP60.2■■■■■ 7.23
CBX4-203ENST00000494546 SUPT5HO00267 1087 aaKnown RBP60.05■■■■■ 7.2
CBX4-203ENST00000494546 TOPBP1Q92547 1522 aa59.72■■■■■ 7.15
CBX4-203ENST00000494546 ABCC8Q09428 1581 aa59.64■■■■■ 7.14
CBX4-203ENST00000494546 DNMBPQ6XZF7 1577 aa59.57■■■■■ 7.13
CBX4-203ENST00000494546 IFT140Q96RY7 1462 aa59.49■■■■■ 7.11
CBX4-203ENST00000494546 ZNF608Q9ULD9 1512 aaPredicted RBP59.31■■■■■ 7.09
CBX4-203ENST00000494546 POLA1P09884 1462 aaPredicted RBP59.17■■■■■ 7.06
CBX4-203ENST00000494546 TARBP1Q13395 1621 aaKnown RBP59.07■■■■■ 7.05
CBX4-203ENST00000494546 CUX1P39880 1505 aa59.04■■■■■ 7.04
CBX4-203ENST00000494546 EIF4G3O43432 1585 aaKnown RBP59.01■■■■■ 7.04
CBX4-203ENST00000494546 RAD54L2Q9Y4B4 1467 aa58.97■■■■■ 7.03
CBX4-203ENST00000494546 FGD5Q6ZNL6 1462 aa58.96■■■■■ 7.03
CBX4-203ENST00000494546 OSCARQ8IYS5 282 aa58.96■■■■■ 7.03
CBX4-203ENST00000494546 SOGA1O94964 1423 aa58.95■■■■■ 7.03
CBX4-203ENST00000494546 AQRO60306 1485 aaKnown RBP eCLIP58.93■■■■■ 7.029e-9■■■■■ 30.5
CBX4-203ENST00000494546 TDRD9Q8NDG6 1382 aaKnown RBP58.72■■■■■ 6.99
CBX4-203ENST00000494546 WDR97A6NE52 1622 aa58.52■■■■■ 6.96
CBX4-203ENST00000494546 WRNQ14191 1432 aaPredicted RBP eCLIP58.44■■■■■ 6.95
CBX4-203ENST00000494546 FBLN2P98095 1184 aa58.42■■■■■ 6.94
CBX4-203ENST00000494546 CHD1O14646 1710 aa58.38■■■■■ 6.94
CBX4-203ENST00000494546 SNAPC4Q5SXM2 1469 aa58.34■■■■■ 6.93
CBX4-203ENST00000494546 TOP2BQ02880 1626 aa58.33■■■■■ 6.93
CBX4-203ENST00000494546 TRIM41Q8WV44 630 aa58.32■■■■■ 6.93
CBX4-203ENST00000494546 SYNJ1O43426 1573 aa58.32■■■■■ 6.93
CBX4-203ENST00000494546 ABCA10Q8WWZ4 1543 aa58.31■■■■■ 6.92
CBX4-203ENST00000494546 BIVM-ERCC5R4GMW8 1640 aa58.3■■■■■ 6.92
CBX4-203ENST00000494546 GRIN2BQ13224 1484 aa58.3■■■■■ 6.92
CBX4-203ENST00000494546 GAPVD1Q14C86 1478 aa58.24■■■■■ 6.91
CBX4-203ENST00000494546 MAGI1Q96QZ7 1491 aaPredicted RBP58.19■■■■■ 6.91
CBX4-203ENST00000494546 ABCA5Q8WWZ7 1642 aa58.12■■■■■ 6.89
CBX4-203ENST00000494546 CHMP7Q8WUX9 453 aaPredicted RBP58.11■■■■■ 6.89
CBX4-203ENST00000494546 PBRM1Q86U86 1689 aa58.1■■■■■ 6.89
CBX4-203ENST00000494546 RIMBP3CA6NJZ7 1639 aa58.03■■■■■ 6.88
CBX4-203ENST00000494546 RIMBP3BA6NNM3 1639 aa58.03■■■■■ 6.88
CBX4-203ENST00000494546 RIMBP3Q9UFD9 1639 aa58.03■■■■■ 6.88
CBX4-203ENST00000494546 SYNJ2O15056 1496 aa57.99■■■■■ 6.87
CBX4-203ENST00000494546 ARHGEF11O15085 1522 aa57.97■■■■■ 6.87
CBX4-203ENST00000494546 CLASP1Q7Z460 1538 aa57.72■■■■■ 6.83
CBX4-203ENST00000494546 ADAMTS12P58397 1594 aa57.63■■■■■ 6.82
CBX4-203ENST00000494546 ERICH3Q5RHP9 1530 aa57.6■■■■■ 6.81
CBX4-203ENST00000494546 CYB5RLQ6IPT4 315 aa57.56■■■■■ 6.8
CBX4-203ENST00000494546 GRIN2AQ12879 1464 aa57.55■■■■■ 6.8
CBX4-203ENST00000494546 FHAD1B1AJZ9 1412 aa57.53■■■■■ 6.8
CBX4-203ENST00000494546 ARAP1Q96P48 1450 aa57.47■■■■■ 6.79
CBX4-203ENST00000494546 NUP160Q12769 1436 aa57.31■■■■■ 6.76
CBX4-203ENST00000494546 CEP170Q5SW79 1584 aa57.29■■■■■ 6.76
CBX4-203ENST00000494546 KIF27Q86VH2 1401 aa57.27■■■■■ 6.76
CBX4-203ENST00000494546 IGF1RP08069 1367 aa57.12■■■■■ 6.73
CBX4-203ENST00000494546 CUL7Q14999 1698 aa56.94■■■■■ 6.71
CBX4-203ENST00000494546 ERCC6L2Q5T890 1561 aa56.93■■■■■ 6.7
CBX4-203ENST00000494546 SHROOM2Q13796 1616 aa56.91■■■■■ 6.7
CBX4-203ENST00000494546 CARMIL1Q5VZK9 1371 aa56.79■■■■■ 6.68
CBX4-203ENST00000494546 RUSC2Q8N2Y8 1516 aa56.79■■■■■ 6.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms