RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DCAF8L2P0C7V8 631 aa24.3■■□□□ 1.48
CPSF1-212ENST00000616140 NISCHQ9Y2I1 1504 aa23.53■■□□□ 1.36
CPSF1-212ENST00000616140 SUPT5HO00267 1087 aaKnown RBP23.42■■□□□ 1.34
CPSF1-212ENST00000616140 SHROOM4Q9ULL8 1493 aa22.99■■□□□ 1.27
CPSF1-212ENST00000616140 EHMT2Q96KQ7 1210 aa22.56■■□□□ 1.2
CPSF1-212ENST00000616140 FAM9AQ8IZU1 332 aaPredicted RBP22.07■■□□□ 1.12
CPSF1-212ENST00000616140 PCGF6Q9BYE7 350 aa22.07■■□□□ 1.12
CPSF1-212ENST00000616140 APLP2Q06481 763 aa21.89■■□□□ 1.09
CPSF1-212ENST00000616140 TTBK1Q5TCY1 1321 aaPredicted RBP21.82■■□□□ 1.08
CPSF1-212ENST00000616140 PELP1Q8IZL8 1130 aaKnown RBP21.77■■□□□ 1.08
CPSF1-212ENST00000616140 TRIM41Q8WV44 630 aa21.62■■□□□ 1.05
CPSF1-212ENST00000616140 RANGAP1P46060 587 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-212ENST00000616140 ZEB1P37275 1124 aaPredicted RBP21.46■■□□□ 1.03
CPSF1-212ENST00000616140 CCER1Q8TC90 406 aaPredicted RBP21.46■■□□□ 1.03
CPSF1-212ENST00000616140 CENPBP07199 599 aaPredicted RBP21.37■■□□□ 1.01
CPSF1-212ENST00000616140 UBTFP17480 764 aaKnown RBP21.28■■□□□ 1
CPSF1-212ENST00000616140 PPARGC1BQ86YN6 1023 aaKnown RBP21.18■□□□□ 0.98
CPSF1-212ENST00000616140 ATP1B4Q9UN42 357 aaPredicted RBP21.14■□□□□ 0.97
CPSF1-212ENST00000616140 TRIM26Q12899 539 aaPredicted RBP21.06■□□□□ 0.96
CPSF1-212ENST00000616140 HRCP23327 699 aa21.03■□□□□ 0.96
CPSF1-212ENST00000616140 YTHDC1Q96MU7 727 aaKnown RBP21.02■□□□□ 0.96
CPSF1-212ENST00000616140 LOC105371045A0A1W2PR82 267 aa21.01■□□□□ 0.95
CPSF1-212ENST00000616140 CHIC1Q5VXU3 224 aa21.01■□□□□ 0.95
CPSF1-212ENST00000616140 ERICH6Q7L0X2 663 aa20.88■□□□□ 0.93
CPSF1-212ENST00000616140 NEFLP07196 543 aa20.78■□□□□ 0.92
CPSF1-212ENST00000616140 ITGAEP38570 1179 aa20.65■□□□□ 0.9
CPSF1-212ENST00000616140 HNRNPUL2Q1KMD3 747 aaKnown RBP20.62■□□□□ 0.89
CPSF1-212ENST00000616140 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-212ENST00000616140 MYT1Q01538 1121 aa20.44■□□□□ 0.86
CPSF1-212ENST00000616140 DIEXFQ68CQ4 756 aaKnown RBP20.34■□□□□ 0.85
CPSF1-212ENST00000616140 POLR3GLQ9BT43 218 aa20.33■□□□□ 0.84
CPSF1-212ENST00000616140 CNGB1Q14028 1251 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-212ENST00000616140 MYT1LQ9UL68 1186 aa20.09■□□□□ 0.81
CPSF1-212ENST00000616140 PABPN1Q86U42 306 aaKnown RBP eCLIP20.08■□□□□ 0.85e-7■■■■□ 24
CPSF1-212ENST00000616140 FAM50AQ14320 339 aaKnown RBP20.06■□□□□ 0.8
CPSF1-212ENST00000616140 ABCC9O60706 1549 aa20.04■□□□□ 0.8
CPSF1-212ENST00000616140 DAXXQ9UER7 740 aaPredicted RBP20.02■□□□□ 0.79
CPSF1-212ENST00000616140 GTF3C3Q9Y5Q9 886 aa20■□□□□ 0.79
CPSF1-212ENST00000616140 NEUROD1Q13562 356 aa19.96■□□□□ 0.79
CPSF1-212ENST00000616140 TRIM52Q96A61 297 aa19.88■□□□□ 0.77
CPSF1-212ENST00000616140 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
CPSF1-212ENST00000616140 BCANQ96GW7 911 aa19.85■□□□□ 0.77
CPSF1-212ENST00000616140 CSRNP3Q8WYN3 585 aa19.81■□□□□ 0.76
CPSF1-212ENST00000616140 SLC4A1APQ9BWU0 796 aaKnown RBP19.76■□□□□ 0.75
CPSF1-212ENST00000616140 ANP32CO43423 234 aa19.74■□□□□ 0.75
CPSF1-212ENST00000616140 ACIN1Q9UKV3 1341 aaKnown RBP19.73■□□□□ 0.75
CPSF1-212ENST00000616140 RTL5Q5HYW3 569 aaPredicted RBP19.7■□□□□ 0.74
CPSF1-212ENST00000616140 ZNF326Q5BKZ1 582 aaKnown RBP19.69■□□□□ 0.74
CPSF1-212ENST00000616140 CLSPNQ9HAW4 1339 aa19.69■□□□□ 0.74
CPSF1-212ENST00000616140 P3H3Q8IVL6 736 aa19.65■□□□□ 0.74
CPSF1-212ENST00000616140 CDK11AQ9UQ88 783 aaPredicted RBP19.54■□□□□ 0.72
CPSF1-212ENST00000616140 DCAF1Q9Y4B6 1507 aa19.53■□□□□ 0.72
CPSF1-212ENST00000616140 ARID3CA6NKF2 412 aa19.52■□□□□ 0.72
CPSF1-212ENST00000616140 FBLN2P98095 1184 aa19.51■□□□□ 0.71
CPSF1-212ENST00000616140 ZCCHC6Q5VYS8 1495 aaKnown RBP19.49■□□□□ 0.71
CPSF1-212ENST00000616140 SCRIBQ14160 1630 aa19.38■□□□□ 0.69
CPSF1-212ENST00000616140 DDX10Q13206 875 aaKnown RBP19.34■□□□□ 0.69
CPSF1-212ENST00000616140 ZNF777Q9ULD5 760 aaPredicted RBP19.33■□□□□ 0.69
CPSF1-212ENST00000616140 FKBP8Q14318 412 aa19.32■□□□□ 0.68
CPSF1-212ENST00000616140 TONSLQ96HA7 1378 aa19.29■□□□□ 0.68
CPSF1-212ENST00000616140 HNRNPUQ00839 825 aaKnown RBP eCLIP19.26■□□□□ 0.67
CPSF1-212ENST00000616140 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
CPSF1-212ENST00000616140 CANXP27824 592 aaKnown RBP19.22■□□□□ 0.67
CPSF1-212ENST00000616140 SCAF1Q9H7N4 1312 aaKnown RBP19.21■□□□□ 0.66
CPSF1-212ENST00000616140 MIER1Q8N108 512 aa19.19■□□□□ 0.66
CPSF1-212ENST00000616140 ANP32AP39687 249 aaKnown RBP19.19■□□□□ 0.66
CPSF1-212ENST00000616140 BCL11AQ9H165 835 aa19.19■□□□□ 0.66
CPSF1-212ENST00000616140 FAM9BQ8IZU0 186 aa19.17■□□□□ 0.66
CPSF1-212ENST00000616140 ZBTB47Q9UFB7 747 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-212ENST00000616140 NPM2Q86SE8 214 aaKnown RBP19.15■□□□□ 0.66
CPSF1-212ENST00000616140 CHIC2Q9UKJ5 165 aa19.15■□□□□ 0.66
CPSF1-212ENST00000616140 HIRIP3Q9BW71 556 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-212ENST00000616140 CLIP1P30622 1438 aa19.09■□□□□ 0.65
CPSF1-212ENST00000616140 SALL2Q9Y467 1007 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-212ENST00000616140 NEFMP07197 916 aa19.06■□□□□ 0.64
CPSF1-212ENST00000616140 RSF1Q96T23 1441 aaPredicted RBP19.05■□□□□ 0.64
CPSF1-212ENST00000616140 SLC24A1O60721 1099 aa19.02■□□□□ 0.64
CPSF1-212ENST00000616140 TMC1Q8TDI8 760 aa19■□□□□ 0.63
CPSF1-212ENST00000616140 MRS2Q9HD23 443 aa19■□□□□ 0.63
CPSF1-212ENST00000616140 MTUS2Q5JR59 1369 aa18.99■□□□□ 0.63
CPSF1-212ENST00000616140 CEP162Q5TB80 1403 aa18.98■□□□□ 0.63
CPSF1-212ENST00000616140 CCDC136Q96JN2 1154 aa18.97■□□□□ 0.63
CPSF1-212ENST00000616140 CHGAP10645 457 aaKnown RBP18.96■□□□□ 0.63
CPSF1-212ENST00000616140 IRX6P78412 446 aaPredicted RBP18.95■□□□□ 0.62
CPSF1-212ENST00000616140 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.92■□□□□ 0.624e-7■■■□□ 16.9
CPSF1-212ENST00000616140 KDM2AQ9Y2K7 1162 aa18.92■□□□□ 0.62
CPSF1-212ENST00000616140 CCDC180Q9P1Z9 1646 aa18.91■□□□□ 0.62
CPSF1-212ENST00000616140 TSPY4P0CV99 314 aa18.89■□□□□ 0.61
CPSF1-212ENST00000616140 TSPY10P0CW01 314 aa18.89■□□□□ 0.61
CPSF1-212ENST00000616140 EEA1Q15075 1411 aa18.89■□□□□ 0.61
CPSF1-212ENST00000616140 RRP7BPQ9NSQ0 103 aa18.89■□□□□ 0.61
CPSF1-212ENST00000616140 EIF4G2P78344 907 aaKnown RBP eCLIP18.87■□□□□ 0.61
CPSF1-212ENST00000616140 GOLGA3Q08378 1498 aa18.87■□□□□ 0.61
CPSF1-212ENST00000616140 NBR1Q14596 966 aa18.82■□□□□ 0.6
CPSF1-212ENST00000616140 WRNQ14191 1432 aaPredicted RBP eCLIP18.82■□□□□ 0.66e-7■■■■■ 33.4
CPSF1-212ENST00000616140 TNIKQ9UKE5 1360 aa18.81■□□□□ 0.6
CPSF1-212ENST00000616140 UPF2Q9HAU5 1272 aaKnown RBP18.8■□□□□ 0.6
CPSF1-212ENST00000616140 HSP90AA1P07900 732 aaKnown RBP18.79■□□□□ 0.6
CPSF1-212ENST00000616140 WDR43Q15061 677 aaKnown RBP eCLIP18.77■□□□□ 0.69e-14■□□□□ 10.2
CPSF1-212ENST00000616140 STAG3Q9UJ98 1225 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms