Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A5A8TX70 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.4■□□□□ 0.86
COL6A5A8TX70 AC133552.2-201ENST00000619106 1032 ntBASIC20.4■□□□□ 0.86
COL6A5A8TX70 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL6A5A8TX70 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.39■□□□□ 0.85
COL6A5A8TX70 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.39■□□□□ 0.85
COL6A5A8TX70 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL6A5A8TX70 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A5A8TX70 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
COL6A5A8TX70 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A5A8TX70 AC008406.3-201ENST00000620001 1374 ntBASIC20.38■□□□□ 0.85
COL6A5A8TX70 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL6A5A8TX70 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A5A8TX70 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL6A5A8TX70 DUX4L9-201ENST00000449051 1259 ntBASIC20.37■□□□□ 0.85
COL6A5A8TX70 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.36■□□□□ 0.85
COL6A5A8TX70 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A5A8TX70 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.35■□□□□ 0.85
COL6A5A8TX70 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A5A8TX70 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL6A5A8TX70 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.35■□□□□ 0.85
COL6A5A8TX70 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A5A8TX70 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
COL6A5A8TX70 AC010980.1-201ENST00000587192 1142 ntBASIC20.34■□□□□ 0.85
COL6A5A8TX70 MIR219A2-201ENST00000608502 1504 ntBASIC20.33■□□□□ 0.85
COL6A5A8TX70 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.33■□□□□ 0.84
COL6A5A8TX70 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.33■□□□□ 0.84
COL6A5A8TX70 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
COL6A5A8TX70 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A5A8TX70 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A5A8TX70 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A5A8TX70 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.32■□□□□ 0.84
COL6A5A8TX70 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
COL6A5A8TX70 AC007029.1-201ENST00000604183 313 ntBASIC20.32■□□□□ 0.84
COL6A5A8TX70 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
COL6A5A8TX70 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL6A5A8TX70 AC009831.1-201ENST00000580420 1582 ntBASIC20.31■□□□□ 0.84
COL6A5A8TX70 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL6A5A8TX70 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A5A8TX70 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.31■□□□□ 0.84
COL6A5A8TX70 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A5A8TX70 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A5A8TX70 YBX1P4-201ENST00000392794 808 ntBASIC20.3■□□□□ 0.84
COL6A5A8TX70 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.3■□□□□ 0.84
COL6A5A8TX70 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL6A5A8TX70 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL6A5A8TX70 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
COL6A5A8TX70 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL6A5A8TX70 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL6A5A8TX70 SPCS2P3-201ENST00000500401 656 ntBASIC20.29■□□□□ 0.84
COL6A5A8TX70 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.29■□□□□ 0.84
COL6A5A8TX70 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A5A8TX70 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A5A8TX70 AL592293.1-201ENST00000502889 1188 ntBASIC20.28■□□□□ 0.84
COL6A5A8TX70 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A5A8TX70 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A5A8TX70 MIR638-201ENST00000385237 100 ntBASIC20.28■□□□□ 0.84
COL6A5A8TX70 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A5A8TX70 BHLHE23-202ENST00000612929 1109 ntBASIC20.28■□□□□ 0.84
COL6A5A8TX70 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A5A8TX70 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A5A8TX70 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A5A8TX70 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A5A8TX70 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COL6A5A8TX70 AC074183.2-201ENST00000623112 922 ntBASIC20.27■□□□□ 0.84
COL6A5A8TX70 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A5A8TX70 AL157400.5-201ENST00000507624 621 ntBASIC20.26■□□□□ 0.83
COL6A5A8TX70 AC103834.1-201ENST00000520383 144 ntBASIC20.26■□□□□ 0.83
COL6A5A8TX70 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.26■□□□□ 0.83
COL6A5A8TX70 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A5A8TX70 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.25■□□□□ 0.83
COL6A5A8TX70 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A5A8TX70 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A5A8TX70 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.24■□□□□ 0.83
COL6A5A8TX70 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A5A8TX70 RPS2-210ENST00000530225 765 ntTSL 2 BASIC20.24■□□□□ 0.83
COL6A5A8TX70 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
COL6A5A8TX70 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC20.24■□□□□ 0.83
COL6A5A8TX70 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL6A5A8TX70 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A5A8TX70 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A5A8TX70 SMPD5-203ENST00000639008 1464 ntBASIC20.23■□□□□ 0.83
COL6A5A8TX70 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A5A8TX70 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A5A8TX70 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A5A8TX70 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A5A8TX70 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A5A8TX70 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.22■□□□□ 0.83
COL6A5A8TX70 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.21■□□□□ 0.83
COL6A5A8TX70 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A5A8TX70 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.21■□□□□ 0.83
COL6A5A8TX70 AC103724.3-201ENST00000564481 992 ntBASIC20.21■□□□□ 0.83
COL6A5A8TX70 AC026202.3-201ENST00000600805 1127 ntBASIC20.21■□□□□ 0.83
COL6A5A8TX70 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A5A8TX70 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.21■□□□□ 0.83
COL6A5A8TX70 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A5A8TX70 RAP2CP1-202ENST00000605179 643 ntBASIC20.21■□□□□ 0.83
COL6A5A8TX70 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.2■□□□□ 0.82
COL6A5A8TX70 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A5A8TX70 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms