Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA3Q9Y5H8 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PCDHA3Q9Y5H8 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.84■■□□□ 1.89
PCDHA3Q9Y5H8 AC100797.4-201ENST00000631653 1827 ntBASIC26.84■■□□□ 1.89
PCDHA3Q9Y5H8 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
PCDHA3Q9Y5H8 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.84■■□□□ 1.89
PCDHA3Q9Y5H8 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHA3Q9Y5H8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
PCDHA3Q9Y5H8 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA3Q9Y5H8 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.81■■□□□ 1.88
PCDHA3Q9Y5H8 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHA3Q9Y5H8 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
PCDHA3Q9Y5H8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHA3Q9Y5H8 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 SUZ12P1-203ENST00000578195 985 ntBASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHA3Q9Y5H8 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHA3Q9Y5H8 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 LINC01003-201ENST00000564834 1764 ntBASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
PCDHA3Q9Y5H8 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
PCDHA3Q9Y5H8 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.76■■□□□ 1.87
PCDHA3Q9Y5H8 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PCDHA3Q9Y5H8 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.75■■□□□ 1.87
PCDHA3Q9Y5H8 AC005559.1-201ENST00000589661 871 ntBASIC26.74■■□□□ 1.87
PCDHA3Q9Y5H8 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
PCDHA3Q9Y5H8 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PCDHA3Q9Y5H8 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHA3Q9Y5H8 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.73■■□□□ 1.87
PCDHA3Q9Y5H8 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
PCDHA3Q9Y5H8 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.73■■□□□ 1.87
PCDHA3Q9Y5H8 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.73■■□□□ 1.87
PCDHA3Q9Y5H8 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA3Q9Y5H8 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA3Q9Y5H8 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA3Q9Y5H8 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA3Q9Y5H8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHA3Q9Y5H8 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 HNRNPLP2-201ENST00000568980 1570 ntBASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PCDHA3Q9Y5H8 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
PCDHA3Q9Y5H8 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.7■■□□□ 1.86
PCDHA3Q9Y5H8 AP002414.2-202ENST00000590929 1450 ntBASIC26.69■■□□□ 1.86
PCDHA3Q9Y5H8 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA3Q9Y5H8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA3Q9Y5H8 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHA3Q9Y5H8 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.69■■□□□ 1.86
PCDHA3Q9Y5H8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
PCDHA3Q9Y5H8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
PCDHA3Q9Y5H8 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.68■■□□□ 1.86
PCDHA3Q9Y5H8 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.68■■□□□ 1.86
PCDHA3Q9Y5H8 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC26.68■■□□□ 1.86
PCDHA3Q9Y5H8 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC26.67■■□□□ 1.86
PCDHA3Q9Y5H8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHA3Q9Y5H8 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.67■■□□□ 1.86
PCDHA3Q9Y5H8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
PCDHA3Q9Y5H8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHA3Q9Y5H8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA3Q9Y5H8 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHA3Q9Y5H8 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.66■■□□□ 1.86
PCDHA3Q9Y5H8 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
PCDHA3Q9Y5H8 AC135983.2-203ENST00000454486 1613 ntBASIC26.65■■□□□ 1.86
PCDHA3Q9Y5H8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.64■■□□□ 1.86
PCDHA3Q9Y5H8 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.64■■□□□ 1.86
PCDHA3Q9Y5H8 MEST-211ENST00000437945 1455 ntTSL 5 BASIC26.64■■□□□ 1.86
PCDHA3Q9Y5H8 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
PCDHA3Q9Y5H8 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHA3Q9Y5H8 AC108673.1-201ENST00000510422 1159 ntBASIC26.63■■□□□ 1.85
PCDHA3Q9Y5H8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.63■■□□□ 1.85
PCDHA3Q9Y5H8 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PCDHA3Q9Y5H8 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
PCDHA3Q9Y5H8 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.62■■□□□ 1.85
PCDHA3Q9Y5H8 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDHA3Q9Y5H8 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
PCDHA3Q9Y5H8 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA3Q9Y5H8 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA3Q9Y5H8 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PCDHA3Q9Y5H8 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms