Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DUX4L22-201ENST00000618238 1269 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L20-201ENST00000619712 1269 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L21-201ENST00000622058 1269 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L10-201ENST00000622460 1267 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 DUX4L25-201ENST00000624915 1269 ntBASIC25.43■■□□□ 1.66
TRIM39Q9HCM9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.42■■□□□ 1.66
TRIM39Q9HCM9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.42■■□□□ 1.66
TRIM39Q9HCM9 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.42■■□□□ 1.66
TRIM39Q9HCM9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
TRIM39Q9HCM9 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
TRIM39Q9HCM9 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
TRIM39Q9HCM9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
TRIM39Q9HCM9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 MIR3648-2-201ENST00000581792 180 ntBASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 MIR3648-1-201ENST00000615959 180 ntBASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
TRIM39Q9HCM9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
TRIM39Q9HCM9 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
TRIM39Q9HCM9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.39■■□□□ 1.66
TRIM39Q9HCM9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.39■■□□□ 1.66
TRIM39Q9HCM9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
TRIM39Q9HCM9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.37■■□□□ 1.65
TRIM39Q9HCM9 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.36■■□□□ 1.65
TRIM39Q9HCM9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
TRIM39Q9HCM9 CR559946.2-201ENST00000623684 991 ntBASIC25.36■■□□□ 1.65
TRIM39Q9HCM9 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
TRIM39Q9HCM9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
TRIM39Q9HCM9 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
TRIM39Q9HCM9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
TRIM39Q9HCM9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.34■■□□□ 1.65
TRIM39Q9HCM9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.34■■□□□ 1.65
TRIM39Q9HCM9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
TRIM39Q9HCM9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM39Q9HCM9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
TRIM39Q9HCM9 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.33■■□□□ 1.65
TRIM39Q9HCM9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.33■■□□□ 1.65
TRIM39Q9HCM9 AC016575.1-201ENST00000607026 382 ntBASIC25.33■■□□□ 1.65
TRIM39Q9HCM9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM39Q9HCM9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
TRIM39Q9HCM9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.31■■□□□ 1.64
TRIM39Q9HCM9 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.31■■□□□ 1.64
TRIM39Q9HCM9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.31■■□□□ 1.64
TRIM39Q9HCM9 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.3■■□□□ 1.64
TRIM39Q9HCM9 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.3■■□□□ 1.64
TRIM39Q9HCM9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
TRIM39Q9HCM9 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.3■■□□□ 1.64
TRIM39Q9HCM9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
TRIM39Q9HCM9 HLA-V-202ENST00000446817 847 ntBASIC25.29■■□□□ 1.64
TRIM39Q9HCM9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.29■■□□□ 1.64
TRIM39Q9HCM9 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.29■■□□□ 1.64
TRIM39Q9HCM9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM39Q9HCM9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.28■■□□□ 1.64
TRIM39Q9HCM9 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM39Q9HCM9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
TRIM39Q9HCM9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.27■■□□□ 1.64
TRIM39Q9HCM9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM39Q9HCM9 MIR639-201ENST00000384974 98 ntBASIC25.26■■□□□ 1.63
TRIM39Q9HCM9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.26■■□□□ 1.63
TRIM39Q9HCM9 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
TRIM39Q9HCM9 AC100797.4-201ENST00000631653 1827 ntBASIC25.26■■□□□ 1.63
TRIM39Q9HCM9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.25■■□□□ 1.63
TRIM39Q9HCM9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.25■■□□□ 1.63
TRIM39Q9HCM9 ABCB10P3-201ENST00000561950 2166 ntBASIC25.25■■□□□ 1.63
TRIM39Q9HCM9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM39Q9HCM9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
TRIM39Q9HCM9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.23■■□□□ 1.63
TRIM39Q9HCM9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
TRIM39Q9HCM9 AC110285.7-201ENST00000624417 1536 ntBASIC25.23■■□□□ 1.63
TRIM39Q9HCM9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.23■■□□□ 1.63
TRIM39Q9HCM9 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM39Q9HCM9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM39Q9HCM9 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
TRIM39Q9HCM9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM39Q9HCM9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
TRIM39Q9HCM9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM39Q9HCM9 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
TRIM39Q9HCM9 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM39Q9HCM9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
TRIM39Q9HCM9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms