Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SSX3Q99909 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SSX3Q99909 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SSX3Q99909 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SSX3Q99909 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SSX3Q99909 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.16■□□□□ 0.98
SSX3Q99909 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.16■□□□□ 0.98
SSX3Q99909 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SSX3Q99909 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SSX3Q99909 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SSX3Q99909 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.14■□□□□ 0.98
SSX3Q99909 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.14■□□□□ 0.98
SSX3Q99909 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SSX3Q99909 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SSX3Q99909 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SSX3Q99909 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SSX3Q99909 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SSX3Q99909 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SSX3Q99909 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SSX3Q99909 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SSX3Q99909 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.13■□□□□ 0.97
SSX3Q99909 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SSX3Q99909 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SSX3Q99909 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.12■□□□□ 0.97
SSX3Q99909 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.12■□□□□ 0.97
SSX3Q99909 AC010864.1-201ENST00000609407 1511 ntBASIC21.12■□□□□ 0.97
SSX3Q99909 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
SSX3Q99909 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SSX3Q99909 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SSX3Q99909 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
SSX3Q99909 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SSX3Q99909 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SSX3Q99909 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SSX3Q99909 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SSX3Q99909 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SSX3Q99909 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.1■□□□□ 0.97
SSX3Q99909 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SSX3Q99909 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC21.09■□□□□ 0.97
SSX3Q99909 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.09■□□□□ 0.97
SSX3Q99909 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SSX3Q99909 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
SSX3Q99909 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SSX3Q99909 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.08■□□□□ 0.96
SSX3Q99909 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX3Q99909 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX3Q99909 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SSX3Q99909 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SSX3Q99909 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SSX3Q99909 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
SSX3Q99909 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
SSX3Q99909 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
SSX3Q99909 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
SSX3Q99909 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.05■□□□□ 0.96
SSX3Q99909 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SSX3Q99909 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.04■□□□□ 0.96
SSX3Q99909 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.04■□□□□ 0.96
SSX3Q99909 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX3Q99909 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SSX3Q99909 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
SSX3Q99909 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX3Q99909 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX3Q99909 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SSX3Q99909 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.03■□□□□ 0.96
SSX3Q99909 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
SSX3Q99909 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SSX3Q99909 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
SSX3Q99909 AL135925.1-201ENST00000605920 1701 ntBASIC21.02■□□□□ 0.96
SSX3Q99909 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX3Q99909 HLA-V-202ENST00000446817 847 ntBASIC21.02■□□□□ 0.96
SSX3Q99909 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SSX3Q99909 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.01■□□□□ 0.95
SSX3Q99909 LINC01971-201ENST00000617888 1048 ntBASIC21.01■□□□□ 0.95
SSX3Q99909 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SSX3Q99909 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SSX3Q99909 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21■□□□□ 0.95
SSX3Q99909 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21■□□□□ 0.95
SSX3Q99909 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SSX3Q99909 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX3Q99909 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
SSX3Q99909 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.99■□□□□ 0.95
SSX3Q99909 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SSX3Q99909 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SSX3Q99909 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
SSX3Q99909 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SSX3Q99909 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.97■□□□□ 0.95
SSX3Q99909 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.97■□□□□ 0.95
SSX3Q99909 DUX4L11-201ENST00000611504 1267 ntBASIC20.97■□□□□ 0.95
SSX3Q99909 DUX4L12-201ENST00000614593 1267 ntBASIC20.97■□□□□ 0.95
SSX3Q99909 DUX4L14-201ENST00000621227 1267 ntBASIC20.97■□□□□ 0.95
SSX3Q99909 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SSX3Q99909 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SSX3Q99909 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SSX3Q99909 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX3Q99909 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SSX3Q99909 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SSX3Q99909 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.94■□□□□ 0.94
SSX3Q99909 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.94■□□□□ 0.94
SSX3Q99909 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SSX3Q99909 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SSX3Q99909 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms