Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
CCDC88AQ3V6T2 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.03■■■□□ 2.72
CCDC88AQ3V6T2 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC88AQ3V6T2 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.02■■■□□ 2.72
CCDC88AQ3V6T2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.02■■■□□ 2.72
CCDC88AQ3V6T2 U85056.1-201ENST00000616429 682 ntBASIC32.02■■■□□ 2.72
CCDC88AQ3V6T2 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
CCDC88AQ3V6T2 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.01■■■□□ 2.71
CCDC88AQ3V6T2 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88AQ3V6T2 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CCDC88AQ3V6T2 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.99■■■□□ 2.71
CCDC88AQ3V6T2 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88AQ3V6T2 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88AQ3V6T2 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC88AQ3V6T2 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC31.98■■■□□ 2.71
CCDC88AQ3V6T2 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88AQ3V6T2 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88AQ3V6T2 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC88AQ3V6T2 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.97■■■□□ 2.71
CCDC88AQ3V6T2 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC88AQ3V6T2 RARRES2P1-201ENST00000474487 481 ntBASIC31.96■■■□□ 2.71
CCDC88AQ3V6T2 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
CCDC88AQ3V6T2 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CCDC88AQ3V6T2 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.96■■■□□ 2.71
CCDC88AQ3V6T2 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC88AQ3V6T2 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
CCDC88AQ3V6T2 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.7
CCDC88AQ3V6T2 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CCDC88AQ3V6T2 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
CCDC88AQ3V6T2 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.93■■■□□ 2.7
CCDC88AQ3V6T2 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.93■■■□□ 2.7
CCDC88AQ3V6T2 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC88AQ3V6T2 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.92■■■□□ 2.7
CCDC88AQ3V6T2 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.92■■■□□ 2.7
CCDC88AQ3V6T2 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 TSPY13P-201ENST00000338964 914 ntBASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 AC148477.6-201ENST00000623746 465 ntBASIC31.91■■■□□ 2.7
CCDC88AQ3V6T2 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.9■■■□□ 2.7
CCDC88AQ3V6T2 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.9■■■□□ 2.7
CCDC88AQ3V6T2 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88AQ3V6T2 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88AQ3V6T2 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC88AQ3V6T2 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.89■■■□□ 2.69
CCDC88AQ3V6T2 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC31.89■■■□□ 2.69
CCDC88AQ3V6T2 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
CCDC88AQ3V6T2 AC092296.2-201ENST00000589470 999 ntBASIC31.86■■■□□ 2.69
CCDC88AQ3V6T2 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC88AQ3V6T2 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.84■■■□□ 2.69
CCDC88AQ3V6T2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC88AQ3V6T2 AC004987.1-201ENST00000428627 508 ntBASIC31.82■■■□□ 2.69
CCDC88AQ3V6T2 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.82■■■□□ 2.69
CCDC88AQ3V6T2 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.82■■■□□ 2.69
CCDC88AQ3V6T2 AC010864.1-201ENST00000609407 1511 ntBASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.82■■■□□ 2.68
CCDC88AQ3V6T2 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC88AQ3V6T2 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC31.8■■■□□ 2.68
CCDC88AQ3V6T2 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88AQ3V6T2 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.79■■■□□ 2.68
CCDC88AQ3V6T2 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC88AQ3V6T2 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.79■■■□□ 2.68
CCDC88AQ3V6T2 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
CCDC88AQ3V6T2 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.77■■■□□ 2.68
CCDC88AQ3V6T2 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.77■■■□□ 2.68
CCDC88AQ3V6T2 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.76■■■□□ 2.68
CCDC88AQ3V6T2 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
CCDC88AQ3V6T2 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC88AQ3V6T2 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88AQ3V6T2 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC88AQ3V6T2 AC019069.1-201ENST00000610008 1333 ntBASIC31.74■■■□□ 2.67
CCDC88AQ3V6T2 AC135983.2-203ENST00000454486 1613 ntBASIC31.72■■■□□ 2.67
CCDC88AQ3V6T2 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.72■■■□□ 2.67
CCDC88AQ3V6T2 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC31.72■■■□□ 2.67
CCDC88AQ3V6T2 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88AQ3V6T2 WHAMMP2-203ENST00000563942 1603 ntBASIC31.71■■■□□ 2.67
CCDC88AQ3V6T2 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88AQ3V6T2 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88AQ3V6T2 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CCDC88AQ3V6T2 ATP5G2P3-201ENST00000429083 425 ntBASIC31.7■■■□□ 2.67
CCDC88AQ3V6T2 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CCDC88AQ3V6T2 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.7■■■□□ 2.66
CCDC88AQ3V6T2 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.69■■■□□ 2.66
CCDC88AQ3V6T2 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.69■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 163 ms