Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC129492.7-201ENST00000622992 756 ntBASIC19.24■□□□□ 0.67
PRKDCP78527 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PRKDCP78527 AC092296.2-201ENST00000589470 999 ntBASIC19.23■□□□□ 0.67
PRKDCP78527 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.23■□□□□ 0.67
PRKDCP78527 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.22■□□□□ 0.67
PRKDCP78527 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PRKDCP78527 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
PRKDCP78527 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PRKDCP78527 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PRKDCP78527 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKDCP78527 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PRKDCP78527 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PRKDCP78527 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PRKDCP78527 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PRKDCP78527 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PRKDCP78527 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PRKDCP78527 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.19■□□□□ 0.66
PRKDCP78527 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKDCP78527 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKDCP78527 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.18■□□□□ 0.66
PRKDCP78527 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19.18■□□□□ 0.66
PRKDCP78527 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKDCP78527 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PRKDCP78527 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PRKDCP78527 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PRKDCP78527 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKDCP78527 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PRKDCP78527 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PRKDCP78527 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PRKDCP78527 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.15■□□□□ 0.66
PRKDCP78527 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
PRKDCP78527 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.15■□□□□ 0.66
PRKDCP78527 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PRKDCP78527 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.14■□□□□ 0.65
PRKDCP78527 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PRKDCP78527 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PRKDCP78527 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.13■□□□□ 0.65
PRKDCP78527 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PRKDCP78527 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PRKDCP78527 GUSBP5-201ENST00000418136 578 ntBASIC19.13■□□□□ 0.65
PRKDCP78527 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.13■□□□□ 0.65
PRKDCP78527 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PRKDCP78527 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PRKDCP78527 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
PRKDCP78527 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PRKDCP78527 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PRKDCP78527 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.12■□□□□ 0.65
PRKDCP78527 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC19.12■□□□□ 0.65
PRKDCP78527 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC19.12■□□□□ 0.65
PRKDCP78527 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.11■□□□□ 0.65
PRKDCP78527 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PRKDCP78527 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
PRKDCP78527 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKDCP78527 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PRKDCP78527 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKDCP78527 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC19.1■□□□□ 0.65
PRKDCP78527 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PRKDCP78527 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKDCP78527 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PRKDCP78527 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.09■□□□□ 0.65
PRKDCP78527 AC148477.6-201ENST00000623746 465 ntBASIC19.09■□□□□ 0.65
PRKDCP78527 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC19.08■□□□□ 0.65
PRKDCP78527 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC19.08■□□□□ 0.65
PRKDCP78527 DUX4L18-201ENST00000553347 1267 ntBASIC19.08■□□□□ 0.65
PRKDCP78527 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.08■□□□□ 0.64
PRKDCP78527 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PRKDCP78527 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKDCP78527 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC19.07■□□□□ 0.64
PRKDCP78527 RP9P-202ENST00000450133 1212 ntBASIC19.07■□□□□ 0.64
PRKDCP78527 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PRKDCP78527 AC025884.2-201ENST00000553429 711 ntBASIC19.07■□□□□ 0.64
PRKDCP78527 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.07■□□□□ 0.64
PRKDCP78527 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.07■□□□□ 0.64
PRKDCP78527 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
PRKDCP78527 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PRKDCP78527 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PRKDCP78527 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PRKDCP78527 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.06■□□□□ 0.64
PRKDCP78527 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PRKDCP78527 AL157400.5-201ENST00000507624 621 ntBASIC19.05■□□□□ 0.64
PRKDCP78527 KRT8P33-201ENST00000508125 1423 ntBASIC19.05■□□□□ 0.64
PRKDCP78527 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PRKDCP78527 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.05■□□□□ 0.64
PRKDCP78527 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PRKDCP78527 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PRKDCP78527 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.04■□□□□ 0.64
PRKDCP78527 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.04■□□□□ 0.64
PRKDCP78527 AL356441.2-201ENST00000443009 864 ntBASIC19.03■□□□□ 0.64
PRKDCP78527 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PRKDCP78527 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PRKDCP78527 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.03■□□□□ 0.64
PRKDCP78527 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.03■□□□□ 0.64
PRKDCP78527 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.03■□□□□ 0.64
PRKDCP78527 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKDCP78527 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.02■□□□□ 0.64
PRKDCP78527 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PRKDCP78527 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PRKDCP78527 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC19.02■□□□□ 0.63
PRKDCP78527 AL592293.1-201ENST00000502889 1188 ntBASIC19.02■□□□□ 0.63
PRKDCP78527 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms