Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL2A1P02458 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.58■■■□□ 2.49
COL2A1P02458 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL2A1P02458 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
COL2A1P02458 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
COL2A1P02458 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
COL2A1P02458 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL2A1P02458 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC30.56■■■□□ 2.48
COL2A1P02458 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL2A1P02458 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL2A1P02458 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL2A1P02458 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL2A1P02458 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC30.55■■■□□ 2.48
COL2A1P02458 TPT1-202ENST00000379055 948 ntTSL 2 BASIC30.55■■■□□ 2.48
COL2A1P02458 RARRES2P2-201ENST00000394842 485 ntBASIC30.55■■■□□ 2.48
COL2A1P02458 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC30.55■■■□□ 2.48
COL2A1P02458 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
COL2A1P02458 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL2A1P02458 GPX1-201ENST00000419349 1106 ntBASIC30.53■■■□□ 2.48
COL2A1P02458 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC30.53■■■□□ 2.48
COL2A1P02458 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL2A1P02458 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL2A1P02458 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.52■■■□□ 2.48
COL2A1P02458 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.52■■■□□ 2.48
COL2A1P02458 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
COL2A1P02458 AC148477.6-201ENST00000623746 465 ntBASIC30.51■■■□□ 2.48
COL2A1P02458 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.51■■■□□ 2.47
COL2A1P02458 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
COL2A1P02458 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL2A1P02458 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.5■■■□□ 2.47
COL2A1P02458 AC110285.7-201ENST00000624417 1536 ntBASIC30.5■■■□□ 2.47
COL2A1P02458 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
COL2A1P02458 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC30.5■■■□□ 2.47
COL2A1P02458 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
COL2A1P02458 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
COL2A1P02458 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
COL2A1P02458 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL2A1P02458 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL2A1P02458 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC30.47■■■□□ 2.47
COL2A1P02458 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.47■■■□□ 2.47
COL2A1P02458 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL2A1P02458 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.46■■■□□ 2.47
COL2A1P02458 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.46■■■□□ 2.47
COL2A1P02458 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC30.45■■■□□ 2.47
COL2A1P02458 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL2A1P02458 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.45■■■□□ 2.47
COL2A1P02458 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.46
COL2A1P02458 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL2A1P02458 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.45■■■□□ 2.46
COL2A1P02458 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.45■■■□□ 2.46
COL2A1P02458 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.44■■■□□ 2.46
COL2A1P02458 RNF126P1-201ENST00000567452 1320 ntBASIC30.44■■■□□ 2.46
COL2A1P02458 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL2A1P02458 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL2A1P02458 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.44■■■□□ 2.46
COL2A1P02458 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.44■■■□□ 2.46
COL2A1P02458 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL2A1P02458 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL2A1P02458 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
COL2A1P02458 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL2A1P02458 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL2A1P02458 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
COL2A1P02458 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL2A1P02458 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL2A1P02458 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC30.43■■■□□ 2.46
COL2A1P02458 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL2A1P02458 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.42■■■□□ 2.46
COL2A1P02458 ABHD17AP5-201ENST00000580133 923 ntBASIC30.42■■■□□ 2.46
COL2A1P02458 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL2A1P02458 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL2A1P02458 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC30.4■■■□□ 2.46
COL2A1P02458 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL2A1P02458 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.4■■■□□ 2.46
COL2A1P02458 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
COL2A1P02458 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL2A1P02458 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL2A1P02458 ST7-AS1-201ENST00000456775 1889 ntBASIC30.4■■■□□ 2.46
COL2A1P02458 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL2A1P02458 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC30.39■■■□□ 2.46
COL2A1P02458 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
COL2A1P02458 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL2A1P02458 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
COL2A1P02458 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
COL2A1P02458 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC30.38■■■□□ 2.45
COL2A1P02458 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL2A1P02458 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC30.38■■■□□ 2.45
COL2A1P02458 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.38■■■□□ 2.45
COL2A1P02458 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
COL2A1P02458 CEP120-209ENST00000515110 606 ntTSL 3 BASIC30.37■■■□□ 2.45
COL2A1P02458 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.37■■■□□ 2.45
COL2A1P02458 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
COL2A1P02458 AP004833.2-201ENST00000532228 1454 ntBASIC30.34■■■□□ 2.45
COL2A1P02458 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC30.34■■■□□ 2.45
COL2A1P02458 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL2A1P02458 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL2A1P02458 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL2A1P02458 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL2A1P02458 AC022413.1-201ENST00000624602 984 ntBASIC30.32■■■□□ 2.44
COL2A1P02458 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL2A1P02458 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms