Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CLDN3O15551 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
CLDN3O15551 AL139393.2-201ENST00000608721 2025 ntBASIC28.13■■■□□ 2.09
CLDN3O15551 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.13■■■□□ 2.09
CLDN3O15551 ABCB10P3-201ENST00000561950 2166 ntBASIC28.13■■■□□ 2.09
CLDN3O15551 AP004833.2-201ENST00000532228 1454 ntBASIC28.11■■■□□ 2.09
CLDN3O15551 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.11■■■□□ 2.09
CLDN3O15551 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CLDN3O15551 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
CLDN3O15551 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.1■■■□□ 2.09
CLDN3O15551 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L13-201ENST00000554103 1267 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L15-201ENST00000611059 1267 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L23-201ENST00000615195 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L24-201ENST00000617576 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L22-201ENST00000618238 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L20-201ENST00000619712 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L21-201ENST00000622058 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L10-201ENST00000622460 1267 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 DUX4L25-201ENST00000624915 1269 ntBASIC28.1■■■□□ 2.09
CLDN3O15551 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CLDN3O15551 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
CLDN3O15551 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
CLDN3O15551 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC28.09■■■□□ 2.09
CLDN3O15551 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.09■■■□□ 2.09
CLDN3O15551 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLDN3O15551 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLDN3O15551 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.08■■■□□ 2.09
CLDN3O15551 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CLDN3O15551 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLDN3O15551 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CLDN3O15551 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLDN3O15551 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLDN3O15551 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
CLDN3O15551 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CLDN3O15551 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.06■■■□□ 2.08
CLDN3O15551 MIR3648-2-201ENST00000581792 180 ntBASIC28.06■■■□□ 2.08
CLDN3O15551 MIR3648-1-201ENST00000615959 180 ntBASIC28.06■■■□□ 2.08
CLDN3O15551 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
CLDN3O15551 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
CLDN3O15551 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CLDN3O15551 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CLDN3O15551 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.05■■■□□ 2.08
CLDN3O15551 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.05■■■□□ 2.08
CLDN3O15551 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
CLDN3O15551 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CLDN3O15551 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CLDN3O15551 CR559946.2-201ENST00000623684 991 ntBASIC28.04■■■□□ 2.08
CLDN3O15551 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.04■■■□□ 2.08
CLDN3O15551 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.03■■■□□ 2.08
CLDN3O15551 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
CLDN3O15551 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.02■■■□□ 2.08
CLDN3O15551 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.02■■■□□ 2.08
CLDN3O15551 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.02■■■□□ 2.08
CLDN3O15551 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CLDN3O15551 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
CLDN3O15551 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28■■■□□ 2.07
CLDN3O15551 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
CLDN3O15551 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28■■■□□ 2.07
CLDN3O15551 AC016575.1-201ENST00000607026 382 ntBASIC28■■■□□ 2.07
CLDN3O15551 AC139426.1-201ENST00000568218 2529 ntBASIC28■■■□□ 2.07
CLDN3O15551 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28■■■□□ 2.07
CLDN3O15551 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.99■■■□□ 2.07
CLDN3O15551 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
CLDN3O15551 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC27.99■■■□□ 2.07
CLDN3O15551 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC27.99■■■□□ 2.07
CLDN3O15551 HLA-V-202ENST00000446817 847 ntBASIC27.98■■■□□ 2.07
CLDN3O15551 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
CLDN3O15551 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC27.97■■■□□ 2.07
CLDN3O15551 HES6-205ENST00000409356 528 ntTSL 2 BASIC27.97■■■□□ 2.07
CLDN3O15551 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.97■■■□□ 2.07
CLDN3O15551 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC27.97■■■□□ 2.07
CLDN3O15551 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
CLDN3O15551 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC27.96■■■□□ 2.07
CLDN3O15551 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
CLDN3O15551 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
CLDN3O15551 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC27.95■■■□□ 2.06
CLDN3O15551 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
CLDN3O15551 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
CLDN3O15551 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
CLDN3O15551 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.94■■■□□ 2.06
CLDN3O15551 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
CLDN3O15551 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CLDN3O15551 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
CLDN3O15551 AC100797.4-201ENST00000631653 1827 ntBASIC27.93■■■□□ 2.06
CLDN3O15551 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.93■■■□□ 2.06
CLDN3O15551 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.93■■■□□ 2.06
CLDN3O15551 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
CLDN3O15551 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC27.92■■■□□ 2.06
CLDN3O15551 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
CLDN3O15551 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC27.92■■■□□ 2.06
CLDN3O15551 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.92■■■□□ 2.06
CLDN3O15551 CHST11-202ENST00000546689 756 ntTSL 2 BASIC27.92■■■□□ 2.06
CLDN3O15551 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.91■■■□□ 2.06
CLDN3O15551 MIR639-201ENST00000384974 98 ntBASIC27.91■■■□□ 2.06
CLDN3O15551 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
CLDN3O15551 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC27.91■■■□□ 2.06
CLDN3O15551 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
CLDN3O15551 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
CLDN3O15551 AC110285.7-201ENST00000624417 1536 ntBASIC27.89■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms