Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NKX6-3A6NJ46 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
NKX6-3A6NJ46 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NKX6-3A6NJ46 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.49■■□□□ 1.03
NKX6-3A6NJ46 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NKX6-3A6NJ46 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NKX6-3A6NJ46 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.47■■□□□ 1.03
NKX6-3A6NJ46 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NKX6-3A6NJ46 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NKX6-3A6NJ46 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 AC135983.2-203ENST00000454486 1613 ntBASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NKX6-3A6NJ46 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NKX6-3A6NJ46 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NKX6-3A6NJ46 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NKX6-3A6NJ46 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NKX6-3A6NJ46 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX6-3A6NJ46 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.43■■□□□ 1.02
NKX6-3A6NJ46 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NKX6-3A6NJ46 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
NKX6-3A6NJ46 MEST-211ENST00000437945 1455 ntTSL 5 BASIC21.42■■□□□ 1.02
NKX6-3A6NJ46 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NKX6-3A6NJ46 WHAMMP2-203ENST00000563942 1603 ntBASIC21.42■■□□□ 1.02
NKX6-3A6NJ46 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.42■■□□□ 1.02
NKX6-3A6NJ46 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 ABHD17AP4-201ENST00000411545 909 ntBASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 ZNRF2P2-203ENST00000454624 420 ntBASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 LINC01971-201ENST00000617888 1048 ntBASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.41■■□□□ 1.02
NKX6-3A6NJ46 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NKX6-3A6NJ46 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX6-3A6NJ46 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NKX6-3A6NJ46 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC21.4■■□□□ 1.02
NKX6-3A6NJ46 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
NKX6-3A6NJ46 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
NKX6-3A6NJ46 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.39■■□□□ 1.01
NKX6-3A6NJ46 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
NKX6-3A6NJ46 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.38■■□□□ 1.01
NKX6-3A6NJ46 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NKX6-3A6NJ46 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.38■■□□□ 1.01
NKX6-3A6NJ46 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NKX6-3A6NJ46 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC21.38■■□□□ 1.01
NKX6-3A6NJ46 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NKX6-3A6NJ46 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NKX6-3A6NJ46 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.37■■□□□ 1.01
NKX6-3A6NJ46 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NKX6-3A6NJ46 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC21.36■■□□□ 1.01
NKX6-3A6NJ46 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
NKX6-3A6NJ46 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
NKX6-3A6NJ46 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
NKX6-3A6NJ46 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
NKX6-3A6NJ46 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.34■■□□□ 1.01
NKX6-3A6NJ46 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.34■■□□□ 1.01
NKX6-3A6NJ46 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
NKX6-3A6NJ46 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
NKX6-3A6NJ46 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
NKX6-3A6NJ46 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
NKX6-3A6NJ46 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.32■■□□□ 1
NKX6-3A6NJ46 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
NKX6-3A6NJ46 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
NKX6-3A6NJ46 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
NKX6-3A6NJ46 AC100797.4-201ENST00000631653 1827 ntBASIC21.31■■□□□ 1
NKX6-3A6NJ46 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC21.31■■□□□ 1
NKX6-3A6NJ46 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.3■■□□□ 1
NKX6-3A6NJ46 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.3■■□□□ 1
NKX6-3A6NJ46 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.3■■□□□ 1
NKX6-3A6NJ46 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.3■■□□□ 1
NKX6-3A6NJ46 DUX4L11-201ENST00000611504 1267 ntBASIC21.3■■□□□ 1
NKX6-3A6NJ46 DUX4L12-201ENST00000614593 1267 ntBASIC21.3■■□□□ 1
NKX6-3A6NJ46 DUX4L14-201ENST00000621227 1267 ntBASIC21.3■■□□□ 1
NKX6-3A6NJ46 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
NKX6-3A6NJ46 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.29■■□□□ 1
NKX6-3A6NJ46 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
NKX6-3A6NJ46 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX6-3A6NJ46 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.28■■□□□ 1
NKX6-3A6NJ46 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.28■■□□□ 1
NKX6-3A6NJ46 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.28■■□□□ 1
NKX6-3A6NJ46 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
NKX6-3A6NJ46 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms