Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHA3Q9Y5H8 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
PCDHA3Q9Y5H8 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
PCDHA3Q9Y5H8 AC097358.2-201ENST00000607541 1159 ntBASIC27.15■■□□□ 1.94
PCDHA3Q9Y5H8 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC27.14■■□□□ 1.94
PCDHA3Q9Y5H8 AP004833.2-201ENST00000532228 1454 ntBASIC27.14■■□□□ 1.94
PCDHA3Q9Y5H8 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
PCDHA3Q9Y5H8 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.14■■□□□ 1.93
PCDHA3Q9Y5H8 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC27.13■■□□□ 1.93
PCDHA3Q9Y5H8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
PCDHA3Q9Y5H8 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.12■■□□□ 1.93
PCDHA3Q9Y5H8 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA3Q9Y5H8 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHA3Q9Y5H8 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC27.11■■□□□ 1.93
PCDHA3Q9Y5H8 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHA3Q9Y5H8 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC27.11■■□□□ 1.93
PCDHA3Q9Y5H8 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCDHA3Q9Y5H8 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC27.1■■□□□ 1.93
PCDHA3Q9Y5H8 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
PCDHA3Q9Y5H8 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA3Q9Y5H8 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHA3Q9Y5H8 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
PCDHA3Q9Y5H8 AC127502.1-201ENST00000399971 1502 ntBASIC27.08■■□□□ 1.93
PCDHA3Q9Y5H8 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC27.08■■□□□ 1.93
PCDHA3Q9Y5H8 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
PCDHA3Q9Y5H8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
PCDHA3Q9Y5H8 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC27.06■■□□□ 1.92
PCDHA3Q9Y5H8 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC27.06■■□□□ 1.92
PCDHA3Q9Y5H8 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
PCDHA3Q9Y5H8 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
PCDHA3Q9Y5H8 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PCDHA3Q9Y5H8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PCDHA3Q9Y5H8 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.04■■□□□ 1.92
PCDHA3Q9Y5H8 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA3Q9Y5H8 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA3Q9Y5H8 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA3Q9Y5H8 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.03■■□□□ 1.92
PCDHA3Q9Y5H8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHA3Q9Y5H8 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC27.01■■□□□ 1.92
PCDHA3Q9Y5H8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
PCDHA3Q9Y5H8 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.99■■□□□ 1.91
PCDHA3Q9Y5H8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHA3Q9Y5H8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.97■■□□□ 1.91
PCDHA3Q9Y5H8 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHA3Q9Y5H8 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHA3Q9Y5H8 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHA3Q9Y5H8 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.95■■□□□ 1.91
PCDHA3Q9Y5H8 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.95■■□□□ 1.91
PCDHA3Q9Y5H8 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.95■■□□□ 1.91
PCDHA3Q9Y5H8 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.95■■□□□ 1.91
PCDHA3Q9Y5H8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.95■■□□□ 1.9
PCDHA3Q9Y5H8 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA3Q9Y5H8 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
PCDHA3Q9Y5H8 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
PCDHA3Q9Y5H8 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA3Q9Y5H8 MIR762-201ENST00000390236 83 ntBASIC26.93■■□□□ 1.9
PCDHA3Q9Y5H8 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA3Q9Y5H8 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.93■■□□□ 1.9
PCDHA3Q9Y5H8 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHA3Q9Y5H8 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
PCDHA3Q9Y5H8 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.91■■□□□ 1.9
PCDHA3Q9Y5H8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
PCDHA3Q9Y5H8 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA3Q9Y5H8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
PCDHA3Q9Y5H8 AL121749.1-202ENST00000609313 2153 ntBASIC26.91■■□□□ 1.9
PCDHA3Q9Y5H8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA3Q9Y5H8 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA3Q9Y5H8 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.9■■□□□ 1.9
PCDHA3Q9Y5H8 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
PCDHA3Q9Y5H8 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHA3Q9Y5H8 BX255925.1-201ENST00000566954 1854 ntBASIC26.89■■□□□ 1.9
PCDHA3Q9Y5H8 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
PCDHA3Q9Y5H8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
PCDHA3Q9Y5H8 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PCDHA3Q9Y5H8 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.88■■□□□ 1.89
PCDHA3Q9Y5H8 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.87■■□□□ 1.89
PCDHA3Q9Y5H8 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.86■■□□□ 1.89
PCDHA3Q9Y5H8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC26.86■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms