Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
DDX4Q9NQI0 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.18■■■□□ 2.58
DDX4Q9NQI0 LINC00273-201ENST00000539813 1452 ntBASIC31.18■■■□□ 2.58
DDX4Q9NQI0 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
DDX4Q9NQI0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
DDX4Q9NQI0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
DDX4Q9NQI0 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
DDX4Q9NQI0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC31.16■■■□□ 2.58
DDX4Q9NQI0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
DDX4Q9NQI0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
DDX4Q9NQI0 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
DDX4Q9NQI0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
DDX4Q9NQI0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
DDX4Q9NQI0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
DDX4Q9NQI0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
DDX4Q9NQI0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
DDX4Q9NQI0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
DDX4Q9NQI0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC31.12■■■□□ 2.57
DDX4Q9NQI0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
DDX4Q9NQI0 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.12■■■□□ 2.57
DDX4Q9NQI0 HSD17B1P1-201ENST00000590052 955 ntBASIC31.11■■■□□ 2.57
DDX4Q9NQI0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.09■■■□□ 2.57
DDX4Q9NQI0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
DDX4Q9NQI0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
DDX4Q9NQI0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
DDX4Q9NQI0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
DDX4Q9NQI0 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
DDX4Q9NQI0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
DDX4Q9NQI0 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.06■■■□□ 2.56
DDX4Q9NQI0 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.06■■■□□ 2.56
DDX4Q9NQI0 AC127502.1-201ENST00000399971 1502 ntBASIC31.05■■■□□ 2.56
DDX4Q9NQI0 AL135925.1-201ENST00000605920 1701 ntBASIC31.05■■■□□ 2.56
DDX4Q9NQI0 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.05■■■□□ 2.56
DDX4Q9NQI0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
DDX4Q9NQI0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
DDX4Q9NQI0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
DDX4Q9NQI0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.03■■■□□ 2.56
DDX4Q9NQI0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
DDX4Q9NQI0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
DDX4Q9NQI0 ABHD17AP3-201ENST00000503096 1137 ntBASIC31.01■■■□□ 2.55
DDX4Q9NQI0 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.01■■■□□ 2.55
DDX4Q9NQI0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31■■■□□ 2.55
DDX4Q9NQI0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.99■■■□□ 2.55
DDX4Q9NQI0 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
DDX4Q9NQI0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
DDX4Q9NQI0 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX4Q9NQI0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.96■■■□□ 2.55
DDX4Q9NQI0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.96■■■□□ 2.55
DDX4Q9NQI0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.96■■■□□ 2.55
DDX4Q9NQI0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
DDX4Q9NQI0 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
DDX4Q9NQI0 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
DDX4Q9NQI0 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.55
DDX4Q9NQI0 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.95■■■□□ 2.54
DDX4Q9NQI0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
DDX4Q9NQI0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.94■■■□□ 2.54
DDX4Q9NQI0 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
DDX4Q9NQI0 WHAMMP2-203ENST00000563942 1603 ntBASIC30.94■■■□□ 2.54
DDX4Q9NQI0 AC135983.2-203ENST00000454486 1613 ntBASIC30.93■■■□□ 2.54
DDX4Q9NQI0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
DDX4Q9NQI0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
DDX4Q9NQI0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.92■■■□□ 2.54
DDX4Q9NQI0 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
DDX4Q9NQI0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
DDX4Q9NQI0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.91■■■□□ 2.54
DDX4Q9NQI0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
DDX4Q9NQI0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.89■■■□□ 2.54
DDX4Q9NQI0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX4Q9NQI0 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
DDX4Q9NQI0 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.86■■■□□ 2.53
DDX4Q9NQI0 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
DDX4Q9NQI0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.86■■■□□ 2.53
DDX4Q9NQI0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
DDX4Q9NQI0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
DDX4Q9NQI0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
DDX4Q9NQI0 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
DDX4Q9NQI0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.83■■■□□ 2.53
DDX4Q9NQI0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
DDX4Q9NQI0 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.83■■■□□ 2.53
DDX4Q9NQI0 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
DDX4Q9NQI0 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
DDX4Q9NQI0 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.82■■■□□ 2.52
DDX4Q9NQI0 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
DDX4Q9NQI0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.81■■■□□ 2.52
DDX4Q9NQI0 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.81■■■□□ 2.52
DDX4Q9NQI0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.81■■■□□ 2.52
DDX4Q9NQI0 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
DDX4Q9NQI0 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
DDX4Q9NQI0 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.8■■■□□ 2.52
DDX4Q9NQI0 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms