Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 AC010864.1-201ENST00000609407 1511 ntBASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
LINC01006Q8NI28 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LINC01006Q8NI28 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LINC01006Q8NI28 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
LINC01006Q8NI28 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LINC01006Q8NI28 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LINC01006Q8NI28 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
LINC01006Q8NI28 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LINC01006Q8NI28 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 SRP68-213ENST00000629930 165 ntTSL 5 BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LINC01006Q8NI28 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LINC01006Q8NI28 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
LINC01006Q8NI28 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.51■□□□□ 0.87
LINC01006Q8NI28 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LINC01006Q8NI28 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LINC01006Q8NI28 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LINC01006Q8NI28 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LINC01006Q8NI28 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LINC01006Q8NI28 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.47■□□□□ 0.87
LINC01006Q8NI28 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
LINC01006Q8NI28 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
LINC01006Q8NI28 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.45■□□□□ 0.86
LINC01006Q8NI28 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.45■□□□□ 0.86
LINC01006Q8NI28 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
LINC01006Q8NI28 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
LINC01006Q8NI28 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LINC01006Q8NI28 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.44■□□□□ 0.86
LINC01006Q8NI28 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01006Q8NI28 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01006Q8NI28 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01006Q8NI28 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01006Q8NI28 RARRES2P2-201ENST00000394842 485 ntBASIC20.43■□□□□ 0.86
LINC01006Q8NI28 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LINC01006Q8NI28 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01006Q8NI28 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
LINC01006Q8NI28 GPX1-201ENST00000419349 1106 ntBASIC20.42■□□□□ 0.86
LINC01006Q8NI28 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.42■□□□□ 0.86
LINC01006Q8NI28 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LINC01006Q8NI28 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LINC01006Q8NI28 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LINC01006Q8NI28 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LINC01006Q8NI28 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LINC01006Q8NI28 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01006Q8NI28 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LINC01006Q8NI28 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LINC01006Q8NI28 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LINC01006Q8NI28 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LINC01006Q8NI28 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.39■□□□□ 0.85
LINC01006Q8NI28 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LINC01006Q8NI28 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.38■□□□□ 0.85
LINC01006Q8NI28 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
LINC01006Q8NI28 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01006Q8NI28 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LINC01006Q8NI28 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LINC01006Q8NI28 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.37■□□□□ 0.85
LINC01006Q8NI28 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01006Q8NI28 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01006Q8NI28 RNF126P1-201ENST00000567452 1320 ntBASIC20.36■□□□□ 0.85
LINC01006Q8NI28 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
LINC01006Q8NI28 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.36■□□□□ 0.85
LINC01006Q8NI28 ABHD17AP5-201ENST00000580133 923 ntBASIC20.36■□□□□ 0.85
LINC01006Q8NI28 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LINC01006Q8NI28 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LINC01006Q8NI28 AC127502.1-201ENST00000399971 1502 ntBASIC20.35■□□□□ 0.85
LINC01006Q8NI28 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LINC01006Q8NI28 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01006Q8NI28 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LINC01006Q8NI28 AC008813.1-201ENST00000536597 885 ntBASIC20.33■□□□□ 0.85
LINC01006Q8NI28 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.33■□□□□ 0.85
LINC01006Q8NI28 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01006Q8NI28 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01006Q8NI28 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01006Q8NI28 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.32■□□□□ 0.84
LINC01006Q8NI28 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LINC01006Q8NI28 AC135983.2-203ENST00000454486 1613 ntBASIC20.31■□□□□ 0.84
LINC01006Q8NI28 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LINC01006Q8NI28 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.31■□□□□ 0.84
LINC01006Q8NI28 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.31■□□□□ 0.84
LINC01006Q8NI28 WHAMMP2-203ENST00000563942 1603 ntBASIC20.31■□□□□ 0.84
LINC01006Q8NI28 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01006Q8NI28 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LINC01006Q8NI28 AC022413.1-201ENST00000624602 984 ntBASIC20.3■□□□□ 0.84
LINC01006Q8NI28 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
LINC01006Q8NI28 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.29■□□□□ 0.84
LINC01006Q8NI28 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
LINC01006Q8NI28 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.28■□□□□ 0.84
LINC01006Q8NI28 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms