Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HADHAP40939 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
HADHAP40939 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.18■■□□□ 1.78
HADHAP40939 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.18■■□□□ 1.78
HADHAP40939 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HADHAP40939 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HADHAP40939 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.17■■□□□ 1.78
HADHAP40939 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HADHAP40939 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HADHAP40939 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.16■■□□□ 1.78
HADHAP40939 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
HADHAP40939 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HADHAP40939 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HADHAP40939 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.15■■□□□ 1.78
HADHAP40939 AL139393.2-201ENST00000608721 2025 ntBASIC26.14■■□□□ 1.78
HADHAP40939 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
HADHAP40939 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.14■■□□□ 1.78
HADHAP40939 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.14■■□□□ 1.78
HADHAP40939 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.13■■□□□ 1.77
HADHAP40939 AL162393.1-201ENST00000437852 946 ntBASIC26.13■■□□□ 1.77
HADHAP40939 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.13■■□□□ 1.77
HADHAP40939 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HADHAP40939 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HADHAP40939 AC142086.6-201ENST00000621154 1765 ntBASIC26.12■■□□□ 1.77
HADHAP40939 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
HADHAP40939 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
HADHAP40939 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HADHAP40939 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
HADHAP40939 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
HADHAP40939 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.1■■□□□ 1.77
HADHAP40939 AC108673.1-201ENST00000510422 1159 ntBASIC26.09■■□□□ 1.77
HADHAP40939 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.09■■□□□ 1.77
HADHAP40939 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.09■■□□□ 1.77
HADHAP40939 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
HADHAP40939 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
HADHAP40939 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC26.08■■□□□ 1.77
HADHAP40939 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
HADHAP40939 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.07■■□□□ 1.76
HADHAP40939 AC087741.3-201ENST00000624270 1347 ntBASIC26.07■■□□□ 1.76
HADHAP40939 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HADHAP40939 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HADHAP40939 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC26.05■■□□□ 1.76
HADHAP40939 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
HADHAP40939 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
HADHAP40939 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.05■■□□□ 1.76
HADHAP40939 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HADHAP40939 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.04■■□□□ 1.76
HADHAP40939 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HADHAP40939 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HADHAP40939 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
HADHAP40939 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.02■■□□□ 1.76
HADHAP40939 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
HADHAP40939 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
HADHAP40939 AC044849.2-201ENST00000606596 710 ntBASIC26.01■■□□□ 1.75
HADHAP40939 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
HADHAP40939 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
HADHAP40939 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26■■□□□ 1.75
HADHAP40939 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
HADHAP40939 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HADHAP40939 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26■■□□□ 1.75
HADHAP40939 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HADHAP40939 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
HADHAP40939 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
HADHAP40939 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.97■■□□□ 1.75
HADHAP40939 MIR6090-201ENST00000622481 60 ntBASIC25.97■■□□□ 1.75
HADHAP40939 AC127502.1-201ENST00000399971 1502 ntBASIC25.97■■□□□ 1.75
HADHAP40939 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.97■■□□□ 1.75
HADHAP40939 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HADHAP40939 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
HADHAP40939 RPS2P35-201ENST00000443417 897 ntBASIC25.96■■□□□ 1.75
HADHAP40939 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
HADHAP40939 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
HADHAP40939 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.75
HADHAP40939 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.74
HADHAP40939 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.95■■□□□ 1.74
HADHAP40939 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
HADHAP40939 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.93■■□□□ 1.74
HADHAP40939 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HADHAP40939 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
HADHAP40939 DRD5P2-201ENST00000421395 2012 ntBASIC25.92■■□□□ 1.74
HADHAP40939 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.91■■□□□ 1.74
HADHAP40939 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.91■■□□□ 1.74
HADHAP40939 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
HADHAP40939 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.9■■□□□ 1.74
HADHAP40939 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.9■■□□□ 1.74
HADHAP40939 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.9■■□□□ 1.74
HADHAP40939 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
HADHAP40939 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HADHAP40939 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.89■■□□□ 1.74
HADHAP40939 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
HADHAP40939 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC25.89■■□□□ 1.74
HADHAP40939 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.89■■□□□ 1.74
HADHAP40939 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
HADHAP40939 AP004833.2-201ENST00000532228 1454 ntBASIC25.88■■□□□ 1.73
HADHAP40939 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
HADHAP40939 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
HADHAP40939 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.88■■□□□ 1.73
HADHAP40939 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
HADHAP40939 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HADHAP40939 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms