Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.76■■■□□ 2.52
HMGB1P09429 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.76■■■□□ 2.52
HMGB1P09429 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
HMGB1P09429 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.74■■■□□ 2.51
HMGB1P09429 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
HMGB1P09429 AC108673.1-201ENST00000510422 1159 ntBASIC30.74■■■□□ 2.51
HMGB1P09429 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
HMGB1P09429 AP004833.2-201ENST00000532228 1454 ntBASIC30.72■■■□□ 2.51
HMGB1P09429 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.71■■■□□ 2.51
HMGB1P09429 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.71■■■□□ 2.51
HMGB1P09429 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.7■■■□□ 2.51
HMGB1P09429 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
HMGB1P09429 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
HMGB1P09429 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.69■■■□□ 2.5
HMGB1P09429 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
HMGB1P09429 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGB1P09429 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
HMGB1P09429 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
HMGB1P09429 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.67■■■□□ 2.5
HMGB1P09429 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
HMGB1P09429 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
HMGB1P09429 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
HMGB1P09429 AL162393.1-201ENST00000437852 946 ntBASIC30.66■■■□□ 2.5
HMGB1P09429 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
HMGB1P09429 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.65■■■□□ 2.5
HMGB1P09429 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
HMGB1P09429 AC087741.3-201ENST00000624270 1347 ntBASIC30.64■■■□□ 2.5
HMGB1P09429 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
HMGB1P09429 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
HMGB1P09429 MIR6090-201ENST00000622481 60 ntBASIC30.63■■■□□ 2.49
HMGB1P09429 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
HMGB1P09429 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
HMGB1P09429 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
HMGB1P09429 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
HMGB1P09429 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.62■■■□□ 2.49
HMGB1P09429 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
HMGB1P09429 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
HMGB1P09429 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
HMGB1P09429 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.59■■■□□ 2.49
HMGB1P09429 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
HMGB1P09429 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
HMGB1P09429 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
HMGB1P09429 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC30.56■■■□□ 2.48
HMGB1P09429 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
HMGB1P09429 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.55■■■□□ 2.48
HMGB1P09429 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.55■■■□□ 2.48
HMGB1P09429 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
HMGB1P09429 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
HMGB1P09429 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
HMGB1P09429 AC044849.2-201ENST00000606596 710 ntBASIC30.54■■■□□ 2.48
HMGB1P09429 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.53■■■□□ 2.48
HMGB1P09429 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
HMGB1P09429 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
HMGB1P09429 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.52■■■□□ 2.48
HMGB1P09429 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
HMGB1P09429 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.52■■■□□ 2.48
HMGB1P09429 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
HMGB1P09429 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.5■■■□□ 2.47
HMGB1P09429 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HMGB1P09429 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
HMGB1P09429 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.49■■■□□ 2.47
HMGB1P09429 DRD5P2-201ENST00000421395 2012 ntBASIC30.47■■■□□ 2.47
HMGB1P09429 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.47■■■□□ 2.47
HMGB1P09429 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
HMGB1P09429 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.46■■■□□ 2.47
HMGB1P09429 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
HMGB1P09429 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.46■■■□□ 2.47
HMGB1P09429 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
HMGB1P09429 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
HMGB1P09429 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.45■■■□□ 2.47
HMGB1P09429 AC142086.6-201ENST00000621154 1765 ntBASIC30.45■■■□□ 2.46
HMGB1P09429 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
HMGB1P09429 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.44■■■□□ 2.46
HMGB1P09429 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.44■■■□□ 2.46
HMGB1P09429 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
HMGB1P09429 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
HMGB1P09429 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
HMGB1P09429 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.42■■■□□ 2.46
HMGB1P09429 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.42■■■□□ 2.46
HMGB1P09429 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.42■■■□□ 2.46
HMGB1P09429 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
HMGB1P09429 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
HMGB1P09429 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
HMGB1P09429 LINC00273-201ENST00000539813 1452 ntBASIC30.41■■■□□ 2.46
HMGB1P09429 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.41■■■□□ 2.46
HMGB1P09429 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.41■■■□□ 2.46
HMGB1P09429 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
HMGB1P09429 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
HMGB1P09429 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.41■■■□□ 2.46
HMGB1P09429 AC135983.2-203ENST00000454486 1613 ntBASIC30.4■■■□□ 2.46
HMGB1P09429 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
HMGB1P09429 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
HMGB1P09429 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
HMGB1P09429 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
HMGB1P09429 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
HMGB1P09429 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
HMGB1P09429 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
HMGB1P09429 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.39■■■□□ 2.46
HMGB1P09429 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.38■■■□□ 2.45
HMGB1P09429 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.38■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms