Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.48■□□□□ 0.71
LSM1O15116 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LSM1O15116 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.48■□□□□ 0.71
LSM1O15116 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LSM1O15116 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
LSM1O15116 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LSM1O15116 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LSM1O15116 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.48■□□□□ 0.71
LSM1O15116 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.47■□□□□ 0.71
LSM1O15116 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.47■□□□□ 0.71
LSM1O15116 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 UBE2DNL-204ENST00000602536 740 ntBASIC19.47■□□□□ 0.71
LSM1O15116 FAM21FP-204ENST00000608637 956 ntBASIC19.47■□□□□ 0.71
LSM1O15116 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LSM1O15116 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.47■□□□□ 0.71
LSM1O15116 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LSM1O15116 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.46■□□□□ 0.71
LSM1O15116 DPP3P2-201ENST00000416030 1696 ntBASIC19.46■□□□□ 0.71
LSM1O15116 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.46■□□□□ 0.71
LSM1O15116 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.46■□□□□ 0.71
LSM1O15116 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.46■□□□□ 0.71
LSM1O15116 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.46■□□□□ 0.71
LSM1O15116 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.46■□□□□ 0.71
LSM1O15116 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.46■□□□□ 0.71
LSM1O15116 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LSM1O15116 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.46■□□□□ 0.71
LSM1O15116 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.45■□□□□ 0.7
LSM1O15116 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LSM1O15116 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.45■□□□□ 0.7
LSM1O15116 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.45■□□□□ 0.7
LSM1O15116 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.45■□□□□ 0.7
LSM1O15116 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.45■□□□□ 0.7
LSM1O15116 CDV3P1-201ENST00000471403 739 ntBASIC19.45■□□□□ 0.7
LSM1O15116 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LSM1O15116 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LSM1O15116 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LSM1O15116 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.45■□□□□ 0.7
LSM1O15116 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LSM1O15116 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.44■□□□□ 0.7
LSM1O15116 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.44■□□□□ 0.7
LSM1O15116 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
LSM1O15116 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LSM1O15116 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.44■□□□□ 0.7
LSM1O15116 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms