RNA–Protein interactions for RNA: ENST00000264596.3

NEIL3-201, Transcript of nei like DNA glycosylase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEIL3, Length 2,408 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEIL3-201ENST00000264596 NISCHQ9Y2I1 1504 aa40.94■■■■■ 4.14
NEIL3-201ENST00000264596 SHROOM4Q9ULL8 1493 aa35■■■■□ 3.19
NEIL3-201ENST00000264596 CCDC180Q9P1Z9 1646 aa34.8■■■■□ 3.16
NEIL3-201ENST00000264596 ZCCHC6Q5VYS8 1495 aaKnown RBP34.63■■■■□ 3.13
NEIL3-201ENST00000264596 SUPT5HO00267 1087 aaKnown RBP34.31■■■■□ 3.08
NEIL3-201ENST00000264596 DCAF8L2P0C7V8 631 aa34.03■■■■□ 3.04
NEIL3-201ENST00000264596 DCAF1Q9Y4B6 1507 aa33.55■■■□□ 2.96
NEIL3-201ENST00000264596 CHIC1Q5VXU3 224 aa33.31■■■□□ 2.92
NEIL3-201ENST00000264596 MYO15BQ96JP2 1530 aa33.22■■■□□ 2.91
NEIL3-201ENST00000264596 ABCC9O60706 1549 aa32.7■■■□□ 2.82
NEIL3-201ENST00000264596 SCRIBQ14160 1630 aa32.69■■■□□ 2.82
NEIL3-201ENST00000264596 RSF1Q96T23 1441 aaPredicted RBP32.4■■■□□ 2.78
NEIL3-201ENST00000264596 LOC105371045A0A1W2PR82 267 aa32.36■■■□□ 2.77
NEIL3-201ENST00000264596 PCGF6Q9BYE7 350 aa32.34■■■□□ 2.77
NEIL3-201ENST00000264596 HRCP23327 699 aa32.31■■■□□ 2.76
NEIL3-201ENST00000264596 NACADO15069 1562 aa32.17■■■□□ 2.74
NEIL3-201ENST00000264596 RB1CC1Q8TDY2 1594 aa32.11■■■□□ 2.73
NEIL3-201ENST00000264596 CECR2Q9BXF3 1484 aa31.96■■■□□ 2.71
NEIL3-201ENST00000264596 TRIM41Q8WV44 630 aa31.94■■■□□ 2.7
NEIL3-201ENST00000264596 MROH2BQ7Z745 1585 aa31.85■■■□□ 2.69
NEIL3-201ENST00000264596 FAM9AQ8IZU1 332 aaPredicted RBP31.72■■■□□ 2.67
NEIL3-201ENST00000264596 WIZO95785 1651 aa31.71■■■□□ 2.67
NEIL3-201ENST00000264596 TRIM26Q12899 539 aaPredicted RBP31.68■■■□□ 2.66
NEIL3-201ENST00000264596 PPARGC1BQ86YN6 1023 aaKnown RBP31.68■■■□□ 2.66
NEIL3-201ENST00000264596 EHMT2Q96KQ7 1210 aa31.49■■■□□ 2.63
NEIL3-201ENST00000264596 BAZ1AQ9NRL2 1556 aaPredicted RBP31.48■■■□□ 2.63
NEIL3-201ENST00000264596 EIF4G1Q04637 1599 aaKnown RBP31.24■■■□□ 2.59
NEIL3-201ENST00000264596 UNC13AQ9UPW8 1703 aa31.23■■■□□ 2.59
NEIL3-201ENST00000264596 SMARCA4P51532 1647 aa31.2■■■□□ 2.58
NEIL3-201ENST00000264596 TOP2AP11388 1531 aaKnown RBP31.18■■■□□ 2.58
NEIL3-201ENST00000264596 CCDC88BA6NC98 1476 aa31.05■■■□□ 2.56
NEIL3-201ENST00000264596 SMARCA2P51531 1590 aa31.02■■■□□ 2.56
NEIL3-201ENST00000264596 ABCC8Q09428 1581 aa31.01■■■□□ 2.55
NEIL3-201ENST00000264596 ZEB1P37275 1124 aaPredicted RBP30.97■■■□□ 2.55
NEIL3-201ENST00000264596 PABPN1Q86U42 306 aaKnown RBP eCLIP30.89■■■□□ 2.54
NEIL3-201ENST00000264596 BICRAQ9NZM4 1560 aa30.8■■■□□ 2.52
NEIL3-201ENST00000264596 SOGA1O94964 1423 aa30.7■■■□□ 2.51
NEIL3-201ENST00000264596 CEP162Q5TB80 1403 aa30.56■■■□□ 2.48
NEIL3-201ENST00000264596 RUSC2Q8N2Y8 1516 aa30.56■■■□□ 2.48
NEIL3-201ENST00000264596 PEG3Q9GZU2 1588 aa30.55■■■□□ 2.48
NEIL3-201ENST00000264596 CSRNP3Q8WYN3 585 aa30.52■■■□□ 2.48
NEIL3-201ENST00000264596 EEA1Q15075 1411 aa30.5■■■□□ 2.47
NEIL3-201ENST00000264596 TNIKQ9UKE5 1360 aa30.49■■■□□ 2.47
NEIL3-201ENST00000264596 WRNQ14191 1432 aaPredicted RBP eCLIP30.48■■■□□ 2.47
NEIL3-201ENST00000264596 TTBK1Q5TCY1 1321 aaPredicted RBP30.48■■■□□ 2.47
NEIL3-201ENST00000264596 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.46■■■□□ 2.47
NEIL3-201ENST00000264596 UBTFP17480 764 aaKnown RBP30.44■■■□□ 2.46
NEIL3-201ENST00000264596 CCER1Q8TC90 406 aaPredicted RBP30.38■■■□□ 2.45
NEIL3-201ENST00000264596 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
NEIL3-201ENST00000264596 GOLGA3Q08378 1498 aa30.34■■■□□ 2.45
NEIL3-201ENST00000264596 SYNJ1O43426 1573 aa30.33■■■□□ 2.45
NEIL3-201ENST00000264596 BAZ1BQ9UIG0 1483 aaKnown RBP30.32■■■□□ 2.44
NEIL3-201ENST00000264596 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
NEIL3-201ENST00000264596 KIF21BO75037 1637 aa30.11■■■□□ 2.41
NEIL3-201ENST00000264596 CLIP1P30622 1438 aa30■■■□□ 2.39
NEIL3-201ENST00000264596 PELP1Q8IZL8 1130 aaKnown RBP29.96■■■□□ 2.39
NEIL3-201ENST00000264596 RAPGEF2Q9Y4G8 1499 aa29.95■■■□□ 2.39
NEIL3-201ENST00000264596 TOP2BQ02880 1626 aa29.93■■■□□ 2.38
NEIL3-201ENST00000264596 RANGAP1P46060 587 aaPredicted RBP29.88■■■□□ 2.37
NEIL3-201ENST00000264596 VPS8Q8N3P4 1428 aa29.85■■■□□ 2.37
NEIL3-201ENST00000264596 BIVM-ERCC5R4GMW8 1640 aa29.82■■■□□ 2.36
NEIL3-201ENST00000264596 HNRNPUL2Q1KMD3 747 aaKnown RBP29.78■■■□□ 2.36
NEIL3-201ENST00000264596 SCAF1Q9H7N4 1312 aaKnown RBP29.78■■■□□ 2.36
NEIL3-201ENST00000264596 HMGXB3Q12766 1538 aa29.76■■■□□ 2.36
NEIL3-201ENST00000264596 DIEXFQ68CQ4 756 aaKnown RBP29.76■■■□□ 2.36
NEIL3-201ENST00000264596 APLP2Q06481 763 aa29.76■■■□□ 2.35
NEIL3-201ENST00000264596 NCAPD3P42695 1498 aa29.75■■■□□ 2.35
NEIL3-201ENST00000264596 CUX1P39880 1505 aa29.65■■■□□ 2.34
NEIL3-201ENST00000264596 ERICH3Q5RHP9 1530 aa29.62■■■□□ 2.33
NEIL3-201ENST00000264596 PRXQ9BXM0 1461 aa29.62■■■□□ 2.33
NEIL3-201ENST00000264596 ZNF316A6NFI3 1004 aaPredicted RBP29.54■■■□□ 2.32
NEIL3-201ENST00000264596 CFTRP13569 1480 aa29.54■■■□□ 2.32
NEIL3-201ENST00000264596 KIF27Q86VH2 1401 aa29.51■■■□□ 2.31
NEIL3-201ENST00000264596 ARAP1Q96P48 1450 aa29.51■■■□□ 2.31
NEIL3-201ENST00000264596 ACIN1Q9UKV3 1341 aaKnown RBP29.5■■■□□ 2.31
NEIL3-201ENST00000264596 NEUROD1Q13562 356 aa29.47■■■□□ 2.31
NEIL3-201ENST00000264596 KANK4Q5T7N3 995 aaPredicted RBP29.36■■■□□ 2.29
NEIL3-201ENST00000264596 CENPBP07199 599 aaPredicted RBP29.34■■■□□ 2.29
NEIL3-201ENST00000264596 PRDM2Q13029 1718 aa29.32■■■□□ 2.28
NEIL3-201ENST00000264596 CUX2O14529 1486 aa29.26■■■□□ 2.27
NEIL3-201ENST00000264596 ARHGAP35Q9NRY4 1499 aa29.25■■■□□ 2.27
NEIL3-201ENST00000264596 CADPSQ9ULU8 1353 aa29.22■■■□□ 2.27
NEIL3-201ENST00000264596 GTF3C3Q9Y5Q9 886 aa29.18■■■□□ 2.26
NEIL3-201ENST00000264596 IGF1RP08069 1367 aa29.17■■■□□ 2.26
NEIL3-201ENST00000264596 DHX57Q6P158 1386 aaKnown RBP29.16■■■□□ 2.26
NEIL3-201ENST00000264596 RRBP1Q9P2E9 1410 aaKnown RBP29.14■■■□□ 2.26
NEIL3-201ENST00000264596 FGD5Q6ZNL6 1462 aa29.13■■■□□ 2.25
NEIL3-201ENST00000264596 MIER1Q8N108 512 aa29.13■■■□□ 2.25
NEIL3-201ENST00000264596 YTHDC1Q96MU7 727 aaKnown RBP29.12■■■□□ 2.25
NEIL3-201ENST00000264596 CLSPNQ9HAW4 1339 aa29.07■■■□□ 2.24
NEIL3-201ENST00000264596 CARMIL1Q5VZK9 1371 aa29.07■■■□□ 2.24
NEIL3-201ENST00000264596 CC2D2AQ9P2K1 1620 aa29.05■■■□□ 2.24
NEIL3-201ENST00000264596 CCNB3Q8WWL7 1395 aa29.05■■■□□ 2.24
NEIL3-201ENST00000264596 ITGAEP38570 1179 aa29.02■■■□□ 2.24
NEIL3-201ENST00000264596 FANCD2Q9BXW9 1451 aa28.96■■■□□ 2.23
NEIL3-201ENST00000264596 TIAM1Q13009 1591 aa28.94■■■□□ 2.22
NEIL3-201ENST00000264596 P3H3Q8IVL6 736 aa28.86■■■□□ 2.21
NEIL3-201ENST00000264596 MAP3K1Q13233 1512 aa28.86■■■□□ 2.21
NEIL3-201ENST00000264596 RAD54L2Q9Y4B4 1467 aa28.85■■■□□ 2.21
NEIL3-201ENST00000264596 LRRC9Q6ZRR7 1453 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms