Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 ACTG1-203ENST00000571691 761 ntTSL 314.61□□□□□ -0.073e-10■□□□□ 9
XRCC6P12956 ACTG1-202ENST00000570382 471 ntTSL 414.59□□□□□ -0.073e-10■□□□□ 9
XRCC6P12956 ACTG1-211ENST00000575994 856 ntTSL 314.32□□□□□ -0.123e-10■□□□□ 9
XRCC6P12956 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC14.28□□□□□ -0.123e-10■□□□□ 9
XRCC6P12956 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.163e-10■□□□□ 9
XRCC6P12956 VEGFA-216ENST00000512683 475 ntTSL 1 (best)14.03□□□□□ -0.163e-10■□□□□ 9
XRCC6P12956 ACTG1-213ENST00000576214 1024 ntTSL 514□□□□□ -0.173e-10■□□□□ 9
XRCC6P12956 ACTG1-214ENST00000576544 1720 ntTSL 513.8□□□□□ -0.23e-10■□□□□ 9
XRCC6P12956 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC13.79□□□□□ -0.23e-10■□□□□ 9
XRCC6P12956 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC13.79□□□□□ -0.23e-10■□□□□ 9
XRCC6P12956 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.23e-10■□□□□ 9
XRCC6P12956 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.796e-9■□□□□ 9
XRCC6P12956 TANGO2-208ENST00000430807 733 ntTSL 325.11■■□□□ 1.611e-7■□□□□ 9
XRCC6P12956 TANGO2-211ENST00000434168 862 ntTSL 320.73■□□□□ 0.911e-7■□□□□ 9
XRCC6P12956 TANGO2-218ENST00000462579 649 ntTSL 417.94■□□□□ 0.461e-7■□□□□ 9
XRCC6P12956 TANGO2-224ENST00000485715 617 ntTSL 514.95□□□□□ -0.021e-7■□□□□ 9
XRCC6P12956 snoU18.1-201ENST00000629629 71 ntBASIC2.33□□□□□ -2.043e-43■□□□□ 9
XRCC6P12956 SNORD18B-201ENST00000365659 72 ntBASIC1.56□□□□□ -2.163e-43■□□□□ 9
XRCC6P12956 ANO9-205ENST00000526142 2868 ntTSL 220.63■□□□□ 0.895e-9■□□□□ 9
XRCC6P12956 ANO9-208ENST00000534161 2158 ntTSL 219.84■□□□□ 0.775e-9■□□□□ 9
XRCC6P12956 RANBP1-211ENST00000448394 688 ntTSL 216.18■□□□□ 0.184e-17■□□□□ 9
XRCC6P12956 VWDE-203ENST00000452576 5936 ntTSL 1 (best)13.77□□□□□ -0.25e-9■□□□□ 9
XRCC6P12956 VWDE-205ENST00000521169 4700 ntTSL 513.37□□□□□ -0.275e-9■□□□□ 9
XRCC6P12956 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC13.37□□□□□ -0.275e-9■□□□□ 9
XRCC6P12956 VWDE-201ENST00000275358 5260 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.35e-9■□□□□ 9
XRCC6P12956 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.5■■□□□ 1.359e-7■□□□□ 9
XRCC6P12956 TAF7-202ENST00000624699 517 ntTSL 37.98□□□□□ -1.139e-7■□□□□ 9
XRCC6P12956 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.022e-16■□□□□ 8.9
XRCC6P12956 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC28.17■■■□□ 2.13e-6■□□□□ 8.9
XRCC6P12956 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC20.45■□□□□ 0.863e-6■□□□□ 8.9
XRCC6P12956 ZNF767P-204ENST00000486492 1616 ntTSL 219.59■□□□□ 0.733e-6■□□□□ 8.9
XRCC6P12956 ZNF767P-203ENST00000481762 357 ntTSL 39.13□□□□□ -0.953e-6■□□□□ 8.9
XRCC6P12956 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC17.18■□□□□ 0.342e-6■□□□□ 8.9
XRCC6P12956 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC17.02■□□□□ 0.322e-6■□□□□ 8.9
XRCC6P12956 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.012e-6■□□□□ 8.9
XRCC6P12956 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.012e-6■□□□□ 8.9
XRCC6P12956 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC13.25□□□□□ -0.292e-6■□□□□ 8.9
XRCC6P12956 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.342e-6■□□□□ 8.9
XRCC6P12956 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC35.21■■■■□ 3.231e-7■□□□□ 8.9
XRCC6P12956 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.29■■■□□ 2.121e-7■□□□□ 8.9
XRCC6P12956 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC25.8■■□□□ 1.721e-7■□□□□ 8.9
XRCC6P12956 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.131e-7■□□□□ 8.9
XRCC6P12956 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.831e-7■□□□□ 8.9
XRCC6P12956 STAG3L5P-PVRIG2P-PILRB-203ENST00000470714 868 ntTSL 318.87■□□□□ 0.611e-7■□□□□ 8.9
XRCC6P12956 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.381e-7■□□□□ 8.9
XRCC6P12956 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.7■□□□□ 0.261e-7■□□□□ 8.9
XRCC6P12956 IGF2BP2-204ENST00000457616 3426 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.131e-7■□□□□ 8.9
XRCC6P12956 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC15.68■□□□□ 0.11e-7■□□□□ 8.9
XRCC6P12956 IGF2BP2-201ENST00000346192 3291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.011e-7■□□□□ 8.9
XRCC6P12956 STAG3L5P-PVRIG2P-PILRB-205ENST00000483329 819 ntTSL 513.61□□□□□ -0.231e-7■□□□□ 8.9
XRCC6P12956 SSBP3-210ENST00000525990 701 ntTSL 213.36□□□□□ -0.271e-7■□□□□ 8.9
XRCC6P12956 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC12.2□□□□□ -0.461e-7■□□□□ 8.9
XRCC6P12956 SRCAP-205ENST00000483083 5937 ntTSL 212.11□□□□□ -0.471e-7■□□□□ 8.9
XRCC6P12956 DDX46-202ENST00000452510 5689 ntTSL 1 (best) BASIC11.76□□□□□ -0.531e-7■□□□□ 8.9
XRCC6P12956 DDX46-207ENST00000507392 3565 ntTSL 210.33□□□□□ -0.761e-7■□□□□ 8.9
XRCC6P12956 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.931e-7■□□□□ 8.9
XRCC6P12956 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.971e-7■□□□□ 8.9
XRCC6P12956 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.981e-7■□□□□ 8.9
XRCC6P12956 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.634e-18■□□□□ 8.9
XRCC6P12956 RASSF1-207ENST00000482447 1711 ntTSL 1 (best)24.57■■□□□ 1.522e-9■□□□□ 8.9
XRCC6P12956 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.55■■□□□ 1.522e-9■□□□□ 8.9
XRCC6P12956 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.242e-9■□□□□ 8.9
XRCC6P12956 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.56■■□□□ 1.24e-18■□□□□ 8.9
XRCC6P12956 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.17■■□□□ 1.142e-9■□□□□ 8.9
XRCC6P12956 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.61■■□□□ 1.052e-9■□□□□ 8.9
XRCC6P12956 RASSF1-204ENST00000395117 1745 ntTSL 220.54■□□□□ 0.882e-9■□□□□ 8.9
XRCC6P12956 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.06■□□□□ 0.644e-18■□□□□ 8.9
XRCC6P12956 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.58■□□□□ 0.572e-9■□□□□ 8.9
XRCC6P12956 FADS3-208ENST00000529404 2379 ntTSL 218.56■□□□□ 0.564e-18■□□□□ 8.9
XRCC6P12956 FADS3-210ENST00000531956 841 ntTSL 516.98■□□□□ 0.314e-18■□□□□ 8.9
XRCC6P12956 FADS3-206ENST00000527379 768 ntTSL 316.72■□□□□ 0.274e-18■□□□□ 8.9
XRCC6P12956 SEMA4C-203ENST00000449330 839 ntTSL 316.29■□□□□ 0.24e-18■□□□□ 8.9
XRCC6P12956 FADS3-211ENST00000533676 5314 ntTSL 216.21■□□□□ 0.194e-18■□□□□ 8.9
XRCC6P12956 FADS3-212ENST00000534223 800 ntTSL 514.47□□□□□ -0.094e-18■□□□□ 8.9
XRCC6P12956 MT-RNR2-201ENST00000387347 1559 ntBASIC6.23□□□□□ -1.411e-323■□□□□ 8.9
XRCC6P12956 UBR4-201ENST00000375218 4031 ntTSL 2 BASIC9.62□□□□□ -0.879e-7■□□□□ 8.9
XRCC6P12956 PCF11-203ENST00000530304 2649 ntTSL 1 (best)24.26■■□□□ 1.472e-13■□□□□ 8.8
XRCC6P12956 PCF11-207ENST00000624931 1720 nt21.78■■□□□ 1.082e-13■□□□□ 8.8
XRCC6P12956 PCF11-206ENST00000533018 580 ntTSL 319.77■□□□□ 0.762e-13■□□□□ 8.8
XRCC6P12956 PCF11-204ENST00000530660 3309 ntTSL 218.47■□□□□ 0.552e-13■□□□□ 8.8
XRCC6P12956 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.212e-13■□□□□ 8.8
XRCC6P12956 ABL1-202ENST00000372348 3824 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.172e-6■□□□□ 8.8
XRCC6P12956 ABL1-203ENST00000393293 532 ntTSL 56.11□□□□□ -1.432e-6■□□□□ 8.8
XRCC6P12956 MVD-212ENST00000565842 285 ntTSL 326.86■■□□□ 1.893e-8■□□□□ 8.8
XRCC6P12956 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.823e-8■□□□□ 8.8
XRCC6P12956 MVD-204ENST00000562741 217 ntTSL 223.55■■□□□ 1.363e-8■□□□□ 8.8
XRCC6P12956 MAPK12-210ENST00000497738 2021 ntTSL 1 (best)23.45■■□□□ 1.343e-8■□□□□ 8.8
XRCC6P12956 MAPK12-208ENST00000496942 2763 ntTSL 223.05■■□□□ 1.283e-8■□□□□ 8.8
XRCC6P12956 HHEX-204ENST00000551454 1307 ntTSL 1 (best)22.97■■□□□ 1.273e-8■□□□□ 8.8
XRCC6P12956 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC35.46■■■■□ 3.274e-12■□□□□ 8.8
XRCC6P12956 MAPK3-207ENST00000466521 1878 ntTSL 535.46■■■■□ 3.274e-12■□□□□ 8.8
XRCC6P12956 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC34.06■■■■□ 3.044e-12■□□□□ 8.8
XRCC6P12956 MAPK3-214ENST00000490298 1718 ntTSL 530.19■■■□□ 2.424e-12■□□□□ 8.8
XRCC6P12956 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.047e-6■□□□□ 8.8
XRCC6P12956 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.39■■□□□ 1.984e-12■□□□□ 8.8
XRCC6P12956 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.964e-12■□□□□ 8.8
XRCC6P12956 VPS28-205ENST00000526204 2120 ntTSL 526.09■■□□□ 1.777e-6■□□□□ 8.8
XRCC6P12956 VPS28-209ENST00000528142 1821 ntTSL 324.19■■□□□ 1.467e-6■□□□□ 8.8
XRCC6P12956 VPS28-213ENST00000530983 2337 ntTSL 524■■□□□ 1.437e-6■□□□□ 8.8
XRCC6P12956 VPS28-212ENST00000530836 1613 ntTSL 523.84■■□□□ 1.417e-6■□□□□ 8.8
Retrieved 100 of 6,788 protein–RNA pairs in 71.9 ms