RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 NISCHQ9Y2I1 1504 aa31.37■■■□□ 2.61
VEGFA-216ENST00000512683 ABCC9O60706 1549 aa28.15■■■□□ 2.1
VEGFA-216ENST00000512683 CCDC180Q9P1Z9 1646 aa28.04■■■□□ 2.08
VEGFA-216ENST00000512683 RB1CC1Q8TDY2 1594 aa26.82■■□□□ 1.88
VEGFA-216ENST00000512683 NACADO15069 1562 aa26.67■■□□□ 1.86
VEGFA-216ENST00000512683 DCAF8L2P0C7V8 631 aa26.56■■□□□ 1.84
VEGFA-216ENST00000512683 DNAJC5BQ9UF47 199 aa26.56■■□□□ 1.84
VEGFA-216ENST00000512683 MYO15BQ96JP2 1530 aa26.39■■□□□ 1.82
VEGFA-216ENST00000512683 PABPN1Q86U42 306 aaKnown RBP eCLIP26.28■■□□□ 1.8
VEGFA-216ENST00000512683 DCAF1Q9Y4B6 1507 aa25.98■■□□□ 1.75
VEGFA-216ENST00000512683 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.75
VEGFA-216ENST00000512683 ZCCHC6Q5VYS8 1495 aaKnown RBP25.95■■□□□ 1.74
VEGFA-216ENST00000512683 UNC13AQ9UPW8 1703 aa25.87■■□□□ 1.73
VEGFA-216ENST00000512683 SHROOM4Q9ULL8 1493 aa25.82■■□□□ 1.72
VEGFA-216ENST00000512683 SCRIBQ14160 1630 aa25.47■■□□□ 1.67
VEGFA-216ENST00000512683 CECR2Q9BXF3 1484 aa25.44■■□□□ 1.66
VEGFA-216ENST00000512683 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
VEGFA-216ENST00000512683 EIF4G1Q04637 1599 aaKnown RBP25.35■■□□□ 1.65
VEGFA-216ENST00000512683 NCAPD3P42695 1498 aa24.71■■□□□ 1.55
VEGFA-216ENST00000512683 DNAJC5Q9H3Z4 198 aa24.58■■□□□ 1.53
VEGFA-216ENST00000512683 ATAD2BQ9ULI0 1458 aa24.54■■□□□ 1.52
VEGFA-216ENST00000512683 SMARCA2P51531 1590 aa24.46■■□□□ 1.51
VEGFA-216ENST00000512683 CUX2O14529 1486 aa24.41■■□□□ 1.5
VEGFA-216ENST00000512683 HMGXB3Q12766 1538 aa24.4■■□□□ 1.5
VEGFA-216ENST00000512683 ERCC6Q03468 1493 aa24.37■■□□□ 1.49
VEGFA-216ENST00000512683 SMARCA4P51532 1647 aa24.36■■□□□ 1.49
VEGFA-216ENST00000512683 BAZ1AQ9NRL2 1556 aaPredicted RBP24.34■■□□□ 1.49
VEGFA-216ENST00000512683 BAZ1BQ9UIG0 1483 aaKnown RBP24.26■■□□□ 1.47
VEGFA-216ENST00000512683 PEG3Q9GZU2 1588 aa24.24■■□□□ 1.47
VEGFA-216ENST00000512683 NESP48681 1621 aa24.13■■□□□ 1.45
VEGFA-216ENST00000512683 MROH2BQ7Z745 1585 aa24.09■■□□□ 1.45
VEGFA-216ENST00000512683 PDS5BQ9NTI5 1447 aa24.04■■□□□ 1.44
VEGFA-216ENST00000512683 LAMC3Q9Y6N6 1575 aa24.03■■□□□ 1.44
VEGFA-216ENST00000512683 CADPSQ9ULU8 1353 aa23.96■■□□□ 1.43
VEGFA-216ENST00000512683 THOC2Q8NI27 1593 aaKnown RBP23.83■■□□□ 1.41
VEGFA-216ENST00000512683 MRC2Q9UBG0 1479 aa23.71■■□□□ 1.39
VEGFA-216ENST00000512683 WIZO95785 1651 aa23.69■■□□□ 1.38
VEGFA-216ENST00000512683 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
VEGFA-216ENST00000512683 KIF21AQ7Z4S6 1674 aa23.65■■□□□ 1.38
VEGFA-216ENST00000512683 CFTRP13569 1480 aa23.62■■□□□ 1.37
VEGFA-216ENST00000512683 WDR62O43379 1518 aa23.61■■□□□ 1.37
VEGFA-216ENST00000512683 CEP164Q9UPV0 1460 aa23.6■■□□□ 1.37
VEGFA-216ENST00000512683 FANCD2Q9BXW9 1451 aa23.57■■□□□ 1.36
VEGFA-216ENST00000512683 TOP2AP11388 1531 aaKnown RBP23.51■■□□□ 1.35
VEGFA-216ENST00000512683 OSCARQ8IYS5 282 aa23.41■■□□□ 1.34
VEGFA-216ENST00000512683 URB2Q14146 1524 aaKnown RBP23.33■■□□□ 1.32
VEGFA-216ENST00000512683 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
VEGFA-216ENST00000512683 CCDC88BA6NC98 1476 aa23.3■■□□□ 1.32
VEGFA-216ENST00000512683 ABCC8Q09428 1581 aa23.2■■□□□ 1.3
VEGFA-216ENST00000512683 IFT140Q96RY7 1462 aa23.2■■□□□ 1.3
VEGFA-216ENST00000512683 TOPBP1Q92547 1522 aa23.1■■□□□ 1.29
VEGFA-216ENST00000512683 ZNF608Q9ULD9 1512 aaPredicted RBP23.05■■□□□ 1.28
VEGFA-216ENST00000512683 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
VEGFA-216ENST00000512683 DNMBPQ6XZF7 1577 aa22.98■■□□□ 1.27
VEGFA-216ENST00000512683 AQRO60306 1485 aaKnown RBP eCLIP22.89■■□□□ 1.253e-9■■■■■ 32.4
VEGFA-216ENST00000512683 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
VEGFA-216ENST00000512683 SOGA1O94964 1423 aa22.86■■□□□ 1.25
VEGFA-216ENST00000512683 TARBP1Q13395 1621 aaKnown RBP22.82■■□□□ 1.24
VEGFA-216ENST00000512683 EIF4G3O43432 1585 aaKnown RBP22.82■■□□□ 1.24
VEGFA-216ENST00000512683 FBLN2P98095 1184 aa22.81■■□□□ 1.24
VEGFA-216ENST00000512683 ARHGEF11O15085 1522 aa22.81■■□□□ 1.24
VEGFA-216ENST00000512683 RIMBP3CA6NJZ7 1639 aa22.79■■□□□ 1.24
VEGFA-216ENST00000512683 RIMBP3BA6NNM3 1639 aa22.79■■□□□ 1.24
VEGFA-216ENST00000512683 RIMBP3Q9UFD9 1639 aa22.79■■□□□ 1.24
VEGFA-216ENST00000512683 CYB5RLQ6IPT4 315 aa22.79■■□□□ 1.24
VEGFA-216ENST00000512683 TDRD9Q8NDG6 1382 aaKnown RBP22.77■■□□□ 1.24
VEGFA-216ENST00000512683 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
VEGFA-216ENST00000512683 CHMP7Q8WUX9 453 aaPredicted RBP22.71■■□□□ 1.23
VEGFA-216ENST00000512683 WDR97A6NE52 1622 aa22.71■■□□□ 1.23
VEGFA-216ENST00000512683 FGD5Q6ZNL6 1462 aa22.69■■□□□ 1.22
VEGFA-216ENST00000512683 GRIN2BQ13224 1484 aa22.64■■□□□ 1.21
VEGFA-216ENST00000512683 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
VEGFA-216ENST00000512683 CUX1P39880 1505 aa22.63■■□□□ 1.21
VEGFA-216ENST00000512683 SNAPC4Q5SXM2 1469 aa22.6■■□□□ 1.21
VEGFA-216ENST00000512683 SUPT5HO00267 1087 aaKnown RBP22.58■■□□□ 1.21
VEGFA-216ENST00000512683 ARAP1Q96P48 1450 aa22.58■■□□□ 1.2
VEGFA-216ENST00000512683 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
VEGFA-216ENST00000512683 CHD1O14646 1710 aa22.56■■□□□ 1.2
VEGFA-216ENST00000512683 TRHP20396 242 aaPredicted RBP22.53■■□□□ 1.2
VEGFA-216ENST00000512683 GAPVD1Q14C86 1478 aa22.53■■□□□ 1.2
VEGFA-216ENST00000512683 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
VEGFA-216ENST00000512683 ABCA10Q8WWZ4 1543 aa22.5■■□□□ 1.19
VEGFA-216ENST00000512683 CLASP1Q7Z460 1538 aa22.49■■□□□ 1.19
VEGFA-216ENST00000512683 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.192e-6■■■■■ 35.2
VEGFA-216ENST00000512683 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
VEGFA-216ENST00000512683 GRIN2AQ12879 1464 aa22.29■■□□□ 1.16
VEGFA-216ENST00000512683 FHAD1B1AJZ9 1412 aa22.29■■□□□ 1.16
VEGFA-216ENST00000512683 NUP160Q12769 1436 aa22.27■■□□□ 1.16
VEGFA-216ENST00000512683 TOP2BQ02880 1626 aa22.26■■□□□ 1.15
VEGFA-216ENST00000512683 PBRM1Q86U86 1689 aa22.25■■□□□ 1.15
VEGFA-216ENST00000512683 ERICH3Q5RHP9 1530 aa22.21■■□□□ 1.15
VEGFA-216ENST00000512683 BIVM-ERCC5R4GMW8 1640 aa22.2■■□□□ 1.14
VEGFA-216ENST00000512683 JPH4Q96JJ6 628 aa22.16■■□□□ 1.14
VEGFA-216ENST00000512683 ADAMTS12P58397 1594 aa22.16■■□□□ 1.14
VEGFA-216ENST00000512683 CEP170Q5SW79 1584 aa22.11■■□□□ 1.13
VEGFA-216ENST00000512683 PRG4Q92954 1404 aaPredicted RBP22.06■■□□□ 1.12
VEGFA-216ENST00000512683 SHROOM2Q13796 1616 aa22.05■■□□□ 1.12
VEGFA-216ENST00000512683 ERCC6L2Q5T890 1561 aa22.04■■□□□ 1.12
VEGFA-216ENST00000512683 IGF1RP08069 1367 aa22■■□□□ 1.11
VEGFA-216ENST00000512683 NPM1P06748 294 aaKnown RBP eCLIP22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms