RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 NISCHQ9Y2I1 1504 aa18.28■□□□□ 0.52
UBR4-201ENST00000375218 SLC24A1O60721 1099 aa18.11■□□□□ 0.49
UBR4-201ENST00000375218 EHMT2Q96KQ7 1210 aa16.88■□□□□ 0.29
UBR4-201ENST00000375218 PLPPR3Q6T4P5 718 aa16.44■□□□□ 0.22
UBR4-201ENST00000375218 DAXXQ9UER7 740 aaPredicted RBP16.44■□□□□ 0.22
UBR4-201ENST00000375218 MYT1Q01538 1121 aa16.29■□□□□ 0.2
UBR4-201ENST00000375218 RTN4Q9NQC3 1192 aaKnown RBP16.24■□□□□ 0.19
UBR4-201ENST00000375218 PRKCSHP14314 528 aaPredicted RBP16.18■□□□□ 0.18
UBR4-201ENST00000375218 TTBK1Q5TCY1 1321 aaPredicted RBP16.05■□□□□ 0.16
UBR4-201ENST00000375218 PELP1Q8IZL8 1130 aaKnown RBP16.03■□□□□ 0.16
UBR4-201ENST00000375218 CHIC1Q5VXU3 224 aa16■□□□□ 0.15
UBR4-201ENST00000375218 ERICH6Q7L0X2 663 aa15.99■□□□□ 0.15
UBR4-201ENST00000375218 NCBP3Q53F19 620 aaKnown RBP15.93■□□□□ 0.14
UBR4-201ENST00000375218 CCDC180Q9P1Z9 1646 aa15.87■□□□□ 0.13
UBR4-201ENST00000375218 APLP2Q06481 763 aa15.85■□□□□ 0.13
UBR4-201ENST00000375218 AMER1Q5JTC6 1135 aaPredicted RBP15.52■□□□□ 0.07
UBR4-201ENST00000375218 TIMELESSQ9UNS1 1208 aa15.48■□□□□ 0.07
UBR4-201ENST00000375218 ZCCHC6Q5VYS8 1495 aaKnown RBP15.46■□□□□ 0.06
UBR4-201ENST00000375218 KCNA4P22459 653 aa15.45■□□□□ 0.06
UBR4-201ENST00000375218 RANGAP1P46060 587 aaPredicted RBP15.37■□□□□ 0.05
UBR4-201ENST00000375218 TULP1O00294 542 aaPredicted RBP15.33■□□□□ 0.05
UBR4-201ENST00000375218 EIF5BO60841 1220 aaKnown RBP15.32■□□□□ 0.04
UBR4-201ENST00000375218 ARXQ96QS3 562 aa15.32■□□□□ 0.04
UBR4-201ENST00000375218 CSRNP3Q8WYN3 585 aa15.21■□□□□ 0.03
UBR4-201ENST00000375218 KLHL34Q8N239 644 aa15.17■□□□□ 0.02
UBR4-201ENST00000375218 DCAF1Q9Y4B6 1507 aa15.04■□□□□ -0
UBR4-201ENST00000375218 PODXL2Q9NZ53 605 aa15.04■□□□□ -0
UBR4-201ENST00000375218 TAOK2Q9UL54 1235 aa15.03■□□□□ -0
UBR4-201ENST00000375218 HOMEZQ8IX15 550 aa14.99□□□□□ -0.01
UBR4-201ENST00000375218 TPRNQ4KMQ1 711 aa14.97□□□□□ -0.01
UBR4-201ENST00000375218 UNC13AQ9UPW8 1703 aa14.95□□□□□ -0.02
UBR4-201ENST00000375218 PLEKHG5O94827 1062 aa14.94□□□□□ -0.02
UBR4-201ENST00000375218 AEBP2Q6ZN18 517 aaPredicted RBP14.91□□□□□ -0.02
UBR4-201ENST00000375218 SHROOM4Q9ULL8 1493 aa14.79□□□□□ -0.04
UBR4-201ENST00000375218 ABCC9O60706 1549 aa14.78□□□□□ -0.04
UBR4-201ENST00000375218 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.04
UBR4-201ENST00000375218 BCANQ96GW7 911 aa14.73□□□□□ -0.05
UBR4-201ENST00000375218 SCRIBQ14160 1630 aa14.66□□□□□ -0.06
UBR4-201ENST00000375218 PHF23Q9BUL5 403 aaPredicted RBP14.64□□□□□ -0.07
UBR4-201ENST00000375218 NPM2Q86SE8 214 aaKnown RBP14.6□□□□□ -0.07
UBR4-201ENST00000375218 BCL11AQ9H165 835 aa14.6□□□□□ -0.07
UBR4-201ENST00000375218 GTF3C3Q9Y5Q9 886 aa14.6□□□□□ -0.07
UBR4-201ENST00000375218 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
UBR4-201ENST00000375218 C14orf37Q86TY3 774 aa14.58□□□□□ -0.08
UBR4-201ENST00000375218 HAP1P54257 671 aaPredicted RBP14.56□□□□□ -0.08
UBR4-201ENST00000375218 NACADO15069 1562 aa14.54□□□□□ -0.08
UBR4-201ENST00000375218 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
UBR4-201ENST00000375218 PLCB2Q00722 1185 aa14.39□□□□□ -0.11
UBR4-201ENST00000375218 SLC4A1APQ9BWU0 796 aaKnown RBP14.36□□□□□ -0.11
UBR4-201ENST00000375218 RB1CC1Q8TDY2 1594 aa14.33□□□□□ -0.12
UBR4-201ENST00000375218 SUPT5HO00267 1087 aaKnown RBP14.33□□□□□ -0.12
UBR4-201ENST00000375218 MROH2BQ7Z745 1585 aa14.31□□□□□ -0.12
UBR4-201ENST00000375218 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
UBR4-201ENST00000375218 WIZO95785 1651 aa14.28□□□□□ -0.12
UBR4-201ENST00000375218 TRIM26Q12899 539 aaPredicted RBP14.25□□□□□ -0.13
UBR4-201ENST00000375218 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
UBR4-201ENST00000375218 FAM9AQ8IZU1 332 aaPredicted RBP14.23□□□□□ -0.13
UBR4-201ENST00000375218 EIF4G1Q04637 1599 aaKnown RBP14.23□□□□□ -0.13
UBR4-201ENST00000375218 LOC105371045A0A1W2PR82 267 aa14.19□□□□□ -0.14
UBR4-201ENST00000375218 TMEM132AQ24JP5 1023 aa14.19□□□□□ -0.14
UBR4-201ENST00000375218 PDIA4P13667 645 aaKnown RBP14.15□□□□□ -0.14
UBR4-201ENST00000375218 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
UBR4-201ENST00000375218 UBTFP17480 764 aaKnown RBP14.06□□□□□ -0.16
UBR4-201ENST00000375218 FBXO3Q9UK99 471 aa14.02□□□□□ -0.17
UBR4-201ENST00000375218 CHMP4AQ9BY43 222 aa14.02□□□□□ -0.17
UBR4-201ENST00000375218 BAZ1AQ9NRL2 1556 aaPredicted RBP14.01□□□□□ -0.17
UBR4-201ENST00000375218 PEG3Q9GZU2 1588 aa14.01□□□□□ -0.17
UBR4-201ENST00000375218 DHX37Q8IY37 1157 aaKnown RBP13.98□□□□□ -0.17
UBR4-201ENST00000375218 PDE4CQ08493 712 aa13.93□□□□□ -0.18
UBR4-201ENST00000375218 HRCP23327 699 aa13.93□□□□□ -0.18
UBR4-201ENST00000375218 UBE2Q2Q8WVN8 375 aa13.92□□□□□ -0.18
UBR4-201ENST00000375218 PABPN1Q86U42 306 aaKnown RBP eCLIP13.9□□□□□ -0.18
UBR4-201ENST00000375218 SMARCA2P51531 1590 aa13.9□□□□□ -0.18
UBR4-201ENST00000375218 FBLN2P98095 1184 aa13.86□□□□□ -0.19
UBR4-201ENST00000375218 CDK11BP21127 795 aaKnown RBP13.85□□□□□ -0.19
UBR4-201ENST00000375218 CDK11AQ9UQ88 783 aaPredicted RBP13.85□□□□□ -0.19
UBR4-201ENST00000375218 KDM2AQ9Y2K7 1162 aa13.85□□□□□ -0.19
UBR4-201ENST00000375218 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
UBR4-201ENST00000375218 ZBTB22O15209 634 aa13.81□□□□□ -0.2
UBR4-201ENST00000375218 FKBP8Q14318 412 aa13.8□□□□□ -0.2
UBR4-201ENST00000375218 SAMD1Q6SPF0 538 aaPredicted RBP13.77□□□□□ -0.21
UBR4-201ENST00000375218 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
UBR4-201ENST00000375218 CCDC88BA6NC98 1476 aa13.76□□□□□ -0.21
UBR4-201ENST00000375218 VSIG10Q8N0Z9 540 aa13.74□□□□□ -0.21
UBR4-201ENST00000375218 NEFLP07196 543 aa13.73□□□□□ -0.21
UBR4-201ENST00000375218 ATAD2BQ9ULI0 1458 aa13.72□□□□□ -0.21
UBR4-201ENST00000375218 POLR3GLQ9BT43 218 aa13.72□□□□□ -0.21
UBR4-201ENST00000375218 PKNOX2Q96KN3 472 aa13.69□□□□□ -0.22
UBR4-201ENST00000375218 PPP6R1Q9UPN7 881 aa13.69□□□□□ -0.22
UBR4-201ENST00000375218 DNAJC5BQ9UF47 199 aa13.68□□□□□ -0.22
UBR4-201ENST00000375218 ABCC8Q09428 1581 aa13.66□□□□□ -0.22
UBR4-201ENST00000375218 IGSF3O75054 1194 aa13.65□□□□□ -0.22
UBR4-201ENST00000375218 BRD2P25440 801 aaKnown RBP13.65□□□□□ -0.22
UBR4-201ENST00000375218 BCL11BQ9C0K0 894 aaPredicted RBP13.63□□□□□ -0.23
UBR4-201ENST00000375218 TAF7LQ5H9L4 462 aa13.6□□□□□ -0.23
UBR4-201ENST00000375218 ARID3AQ99856 593 aa13.6□□□□□ -0.23
UBR4-201ENST00000375218 CC2D2AQ9P2K1 1620 aa13.59□□□□□ -0.23
UBR4-201ENST00000375218 ADRA2BP18089 450 aa13.59□□□□□ -0.23
UBR4-201ENST00000375218 CNKSR2Q8WXI2 1034 aa13.55□□□□□ -0.24
UBR4-201ENST00000375218 SYNJ1O43426 1573 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms