RNA–Protein interactions for RNA: ENST00000523125.5

VEGFA-223, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-223ENST00000523125 NISCHQ9Y2I1 1504 aa30.79■■■□□ 2.52
VEGFA-223ENST00000523125 CCDC180Q9P1Z9 1646 aa27.56■■■□□ 2
VEGFA-223ENST00000523125 ABCC9O60706 1549 aa27.23■■□□□ 1.95
VEGFA-223ENST00000523125 RB1CC1Q8TDY2 1594 aa26.05■■□□□ 1.76
VEGFA-223ENST00000523125 NACADO15069 1562 aa25.95■■□□□ 1.74
VEGFA-223ENST00000523125 DCAF8L2P0C7V8 631 aa25.79■■□□□ 1.72
VEGFA-223ENST00000523125 MYO15BQ96JP2 1530 aa25.68■■□□□ 1.7
VEGFA-223ENST00000523125 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
VEGFA-223ENST00000523125 ZCCHC6Q5VYS8 1495 aaKnown RBP25.57■■□□□ 1.68
VEGFA-223ENST00000523125 DCAF1Q9Y4B6 1507 aa25.46■■□□□ 1.67
VEGFA-223ENST00000523125 PABPN1Q86U42 306 aaKnown RBP eCLIP25.38■■□□□ 1.65
VEGFA-223ENST00000523125 DNAJC5BQ9UF47 199 aa25.36■■□□□ 1.65
VEGFA-223ENST00000523125 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
VEGFA-223ENST00000523125 SCRIBQ14160 1630 aa25.08■■□□□ 1.61
VEGFA-223ENST00000523125 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
VEGFA-223ENST00000523125 CC2D2AQ9P2K1 1620 aa24.66■■□□□ 1.54
VEGFA-223ENST00000523125 EIF4G1Q04637 1599 aaKnown RBP24.66■■□□□ 1.54
VEGFA-223ENST00000523125 CECR2Q9BXF3 1484 aa24.5■■□□□ 1.51
VEGFA-223ENST00000523125 SMARCA4P51532 1647 aa23.99■■□□□ 1.43
VEGFA-223ENST00000523125 NCAPD3P42695 1498 aa23.94■■□□□ 1.42
VEGFA-223ENST00000523125 ATAD2BQ9ULI0 1458 aa23.91■■□□□ 1.42
VEGFA-223ENST00000523125 BAZ1AQ9NRL2 1556 aaPredicted RBP23.86■■□□□ 1.41
VEGFA-223ENST00000523125 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
VEGFA-223ENST00000523125 HMGXB3Q12766 1538 aa23.8■■□□□ 1.4
VEGFA-223ENST00000523125 PEG3Q9GZU2 1588 aa23.75■■□□□ 1.39
VEGFA-223ENST00000523125 MROH2BQ7Z745 1585 aa23.74■■□□□ 1.39
VEGFA-223ENST00000523125 BAZ1BQ9UIG0 1483 aaKnown RBP23.67■■□□□ 1.38
VEGFA-223ENST00000523125 NESP48681 1621 aa23.5■■□□□ 1.35
VEGFA-223ENST00000523125 WIZO95785 1651 aa23.5■■□□□ 1.35
VEGFA-223ENST00000523125 ERCC6Q03468 1493 aa23.45■■□□□ 1.34
VEGFA-223ENST00000523125 LAMC3Q9Y6N6 1575 aa23.38■■□□□ 1.33
VEGFA-223ENST00000523125 CUX2O14529 1486 aa23.36■■□□□ 1.33
VEGFA-223ENST00000523125 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
VEGFA-223ENST00000523125 KIF21AQ7Z4S6 1674 aa23.26■■□□□ 1.31
VEGFA-223ENST00000523125 THOC2Q8NI27 1593 aaKnown RBP23.23■■□□□ 1.31
VEGFA-223ENST00000523125 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
VEGFA-223ENST00000523125 TOP2AP11388 1531 aaKnown RBP23.18■■□□□ 1.3
VEGFA-223ENST00000523125 PDS5BQ9NTI5 1447 aa23.17■■□□□ 1.3
VEGFA-223ENST00000523125 DNAJC5Q9H3Z4 198 aa23.05■■□□□ 1.28
VEGFA-223ENST00000523125 CFTRP13569 1480 aa23.02■■□□□ 1.28
VEGFA-223ENST00000523125 MRC2Q9UBG0 1479 aa22.98■■□□□ 1.27
VEGFA-223ENST00000523125 WDR62O43379 1518 aa22.95■■□□□ 1.26
VEGFA-223ENST00000523125 FANCD2Q9BXW9 1451 aa22.95■■□□□ 1.26
VEGFA-223ENST00000523125 CEP164Q9UPV0 1460 aa22.94■■□□□ 1.26
VEGFA-223ENST00000523125 CCDC88BA6NC98 1476 aa22.92■■□□□ 1.26
VEGFA-223ENST00000523125 PRDM2Q13029 1718 aa22.91■■□□□ 1.26
VEGFA-223ENST00000523125 URB2Q14146 1524 aaKnown RBP22.77■■□□□ 1.24
VEGFA-223ENST00000523125 TOPBP1Q92547 1522 aa22.57■■□□□ 1.2
VEGFA-223ENST00000523125 ABCC8Q09428 1581 aa22.51■■□□□ 1.19
VEGFA-223ENST00000523125 DNMBPQ6XZF7 1577 aa22.5■■□□□ 1.19
VEGFA-223ENST00000523125 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
VEGFA-223ENST00000523125 ZNF608Q9ULD9 1512 aaPredicted RBP22.44■■□□□ 1.18
VEGFA-223ENST00000523125 SUPT5HO00267 1087 aaKnown RBP22.43■■□□□ 1.18
VEGFA-223ENST00000523125 TARBP1Q13395 1621 aaKnown RBP22.39■■□□□ 1.18
VEGFA-223ENST00000523125 POLA1P09884 1462 aaPredicted RBP22.34■■□□□ 1.17
VEGFA-223ENST00000523125 EIF4G3O43432 1585 aaKnown RBP22.34■■□□□ 1.17
VEGFA-223ENST00000523125 OSCARQ8IYS5 282 aa22.31■■□□□ 1.16
VEGFA-223ENST00000523125 CUX1P39880 1505 aa22.29■■□□□ 1.16
VEGFA-223ENST00000523125 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.153e-9■■■■□ 26.7
VEGFA-223ENST00000523125 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
VEGFA-223ENST00000523125 FGD5Q6ZNL6 1462 aa22.24■■□□□ 1.15
VEGFA-223ENST00000523125 SOGA1O94964 1423 aa22.23■■□□□ 1.15
VEGFA-223ENST00000523125 CHD1O14646 1710 aa22.17■■□□□ 1.14
VEGFA-223ENST00000523125 TDRD9Q8NDG6 1382 aaKnown RBP22.15■■□□□ 1.14
VEGFA-223ENST00000523125 WDR97A6NE52 1622 aa22.14■■□□□ 1.14
VEGFA-223ENST00000523125 TRIM41Q8WV44 630 aa22.1■■□□□ 1.13
VEGFA-223ENST00000523125 RIMBP3CA6NJZ7 1639 aa22.06■■□□□ 1.12
VEGFA-223ENST00000523125 RIMBP3BA6NNM3 1639 aa22.06■■□□□ 1.12
VEGFA-223ENST00000523125 RIMBP3Q9UFD9 1639 aa22.06■■□□□ 1.12
VEGFA-223ENST00000523125 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
VEGFA-223ENST00000523125 BIVM-ERCC5R4GMW8 1640 aa22.03■■□□□ 1.12
VEGFA-223ENST00000523125 PBRM1Q86U86 1689 aa22.01■■□□□ 1.11
VEGFA-223ENST00000523125 TOP2BQ02880 1626 aa22.01■■□□□ 1.11
VEGFA-223ENST00000523125 ABCA10Q8WWZ4 1543 aa22.01■■□□□ 1.11
VEGFA-223ENST00000523125 FBLN2P98095 1184 aa22■■□□□ 1.11
VEGFA-223ENST00000523125 GRIN2BQ13224 1484 aa22■■□□□ 1.11
VEGFA-223ENST00000523125 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
VEGFA-223ENST00000523125 MAGI1Q96QZ7 1491 aaPredicted RBP21.99■■□□□ 1.11
VEGFA-223ENST00000523125 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
VEGFA-223ENST00000523125 ABCA5Q8WWZ7 1642 aa21.98■■□□□ 1.11
VEGFA-223ENST00000523125 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.111e-6■■■■□ 26.4
VEGFA-223ENST00000523125 GAPVD1Q14C86 1478 aa21.97■■□□□ 1.11
VEGFA-223ENST00000523125 SYNJ2O15056 1496 aa21.9■■□□□ 1.1
VEGFA-223ENST00000523125 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
VEGFA-223ENST00000523125 CLASP1Q7Z460 1538 aa21.89■■□□□ 1.09
VEGFA-223ENST00000523125 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
VEGFA-223ENST00000523125 ADAMTS12P58397 1594 aa21.78■■□□□ 1.08
VEGFA-223ENST00000523125 CYB5RLQ6IPT4 315 aa21.77■■□□□ 1.08
VEGFA-223ENST00000523125 ERICH3Q5RHP9 1530 aa21.74■■□□□ 1.07
VEGFA-223ENST00000523125 GRIN2AQ12879 1464 aa21.73■■□□□ 1.07
VEGFA-223ENST00000523125 FHAD1B1AJZ9 1412 aa21.69■■□□□ 1.06
VEGFA-223ENST00000523125 CEP170Q5SW79 1584 aa21.68■■□□□ 1.06
VEGFA-223ENST00000523125 NUP160Q12769 1436 aa21.66■■□□□ 1.06
VEGFA-223ENST00000523125 SHROOM2Q13796 1616 aa21.58■■□□□ 1.05
VEGFA-223ENST00000523125 ERCC6L2Q5T890 1561 aa21.58■■□□□ 1.05
VEGFA-223ENST00000523125 KIF27Q86VH2 1401 aa21.52■■□□□ 1.04
VEGFA-223ENST00000523125 IGF1RP08069 1367 aa21.51■■□□□ 1.03
VEGFA-223ENST00000523125 CUL7Q14999 1698 aa21.49■■□□□ 1.03
VEGFA-223ENST00000523125 RUSC2Q8N2Y8 1516 aa21.48■■□□□ 1.03
VEGFA-223ENST00000523125 TRHP20396 242 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms