RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 NISCHQ9Y2I1 1504 aa39.89■■■■□ 3.98
SSBP3-216ENST00000610401 SHROOM4Q9ULL8 1493 aa35.96■■■■□ 3.35
SSBP3-216ENST00000610401 SUPT5HO00267 1087 aaKnown RBP35.53■■■■□ 3.28
SSBP3-216ENST00000610401 DCAF8L2P0C7V8 631 aa34.87■■■■□ 3.17
SSBP3-216ENST00000610401 PCGF6Q9BYE7 350 aa34.15■■■■□ 3.06
SSBP3-216ENST00000610401 CHIC1Q5VXU3 224 aa34.08■■■■□ 3.05
SSBP3-216ENST00000610401 MYO15BQ96JP2 1530 aa34.02■■■■□ 3.04
SSBP3-216ENST00000610401 PPARGC1BQ86YN6 1023 aaKnown RBP33.88■■■■□ 3.01
SSBP3-216ENST00000610401 HRCP23327 699 aa33.86■■■■□ 3.01
SSBP3-216ENST00000610401 LOC105371045A0A1W2PR82 267 aa33.71■■■□□ 2.99
SSBP3-216ENST00000610401 ZCCHC6Q5VYS8 1495 aaKnown RBP33.69■■■□□ 2.98
SSBP3-216ENST00000610401 EHMT2Q96KQ7 1210 aa33.37■■■□□ 2.93
SSBP3-216ENST00000610401 FAM9AQ8IZU1 332 aaPredicted RBP33.07■■■□□ 2.88
SSBP3-216ENST00000610401 CCDC180Q9P1Z9 1646 aa32.94■■■□□ 2.86
SSBP3-216ENST00000610401 TRIM26Q12899 539 aaPredicted RBP32.71■■■□□ 2.83
SSBP3-216ENST00000610401 TRIM41Q8WV44 630 aa32.6■■■□□ 2.81
SSBP3-216ENST00000610401 DCAF1Q9Y4B6 1507 aa32.53■■■□□ 2.8
SSBP3-216ENST00000610401 TTBK1Q5TCY1 1321 aaPredicted RBP32.29■■■□□ 2.76
SSBP3-216ENST00000610401 SCRIBQ14160 1630 aa32.13■■■□□ 2.73
SSBP3-216ENST00000610401 RSF1Q96T23 1441 aaPredicted RBP32.07■■■□□ 2.72
SSBP3-216ENST00000610401 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.96■■■□□ 2.71
SSBP3-216ENST00000610401 ZEB1P37275 1124 aaPredicted RBP31.9■■■□□ 2.7
SSBP3-216ENST00000610401 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
SSBP3-216ENST00000610401 ABCC9O60706 1549 aa31.82■■■□□ 2.68
SSBP3-216ENST00000610401 SCAF1Q9H7N4 1312 aaKnown RBP31.82■■■□□ 2.68
SSBP3-216ENST00000610401 CCER1Q8TC90 406 aaPredicted RBP31.75■■■□□ 2.67
SSBP3-216ENST00000610401 CECR2Q9BXF3 1484 aa31.65■■■□□ 2.66
SSBP3-216ENST00000610401 MROH2BQ7Z745 1585 aa31.36■■■□□ 2.61
SSBP3-216ENST00000610401 NEUROD1Q13562 356 aa31.33■■■□□ 2.61
SSBP3-216ENST00000610401 RANGAP1P46060 587 aaPredicted RBP31.24■■■□□ 2.59
SSBP3-216ENST00000610401 DIEXFQ68CQ4 756 aaKnown RBP31.23■■■□□ 2.59
SSBP3-216ENST00000610401 UBTFP17480 764 aaKnown RBP31.21■■■□□ 2.59
SSBP3-216ENST00000610401 YTHDC1Q96MU7 727 aaKnown RBP31.21■■■□□ 2.59
SSBP3-216ENST00000610401 WIZO95785 1651 aa31.2■■■□□ 2.59
SSBP3-216ENST00000610401 GTF3C3Q9Y5Q9 886 aa31.13■■■□□ 2.57
SSBP3-216ENST00000610401 ACIN1Q9UKV3 1341 aaKnown RBP31.13■■■□□ 2.57
SSBP3-216ENST00000610401 HNRNPUL2Q1KMD3 747 aaKnown RBP31.01■■■□□ 2.56
SSBP3-216ENST00000610401 PELP1Q8IZL8 1130 aaKnown RBP31.01■■■□□ 2.55
SSBP3-216ENST00000610401 ABCC8Q09428 1581 aa31■■■□□ 2.55
SSBP3-216ENST00000610401 CCDC88BA6NC98 1476 aa30.93■■■□□ 2.54
SSBP3-216ENST00000610401 SOGA1O94964 1423 aa30.9■■■□□ 2.54
SSBP3-216ENST00000610401 PABPN1Q86U42 306 aaKnown RBP eCLIP30.87■■■□□ 2.53
SSBP3-216ENST00000610401 CENPBP07199 599 aaPredicted RBP30.87■■■□□ 2.53
SSBP3-216ENST00000610401 CEP162Q5TB80 1403 aa30.8■■■□□ 2.52
SSBP3-216ENST00000610401 RUSC2Q8N2Y8 1516 aa30.76■■■□□ 2.51
SSBP3-216ENST00000610401 CSRNP3Q8WYN3 585 aa30.75■■■□□ 2.51
SSBP3-216ENST00000610401 NACADO15069 1562 aa30.68■■■□□ 2.5
SSBP3-216ENST00000610401 ZNF316A6NFI3 1004 aaPredicted RBP30.64■■■□□ 2.5
SSBP3-216ENST00000610401 MIER1Q8N108 512 aa30.59■■■□□ 2.49
SSBP3-216ENST00000610401 BAZ1AQ9NRL2 1556 aaPredicted RBP30.54■■■□□ 2.48
SSBP3-216ENST00000610401 APLP2Q06481 763 aa30.47■■■□□ 2.47
SSBP3-216ENST00000610401 TNIKQ9UKE5 1360 aa30.44■■■□□ 2.46
SSBP3-216ENST00000610401 WRNQ14191 1432 aaPredicted RBP eCLIP30.33■■■□□ 2.457e-6■■■■■ 31.3
SSBP3-216ENST00000610401 EIF4G1Q04637 1599 aaKnown RBP30.32■■■□□ 2.44
SSBP3-216ENST00000610401 TOP2AP11388 1531 aaKnown RBP30.3■■■□□ 2.44
SSBP3-216ENST00000610401 SMARCA2P51531 1590 aa30.29■■■□□ 2.44
SSBP3-216ENST00000610401 ITGAEP38570 1179 aa30.26■■■□□ 2.44
SSBP3-216ENST00000610401 SMARCA4P51532 1647 aa30.21■■■□□ 2.43
SSBP3-216ENST00000610401 GOLGA3Q08378 1498 aa30.19■■■□□ 2.42
SSBP3-216ENST00000610401 CLIP1P30622 1438 aa30.15■■■□□ 2.42
SSBP3-216ENST00000610401 EEA1Q15075 1411 aa29.98■■■□□ 2.39
SSBP3-216ENST00000610401 RAPGEF2Q9Y4G8 1499 aa29.96■■■□□ 2.39
SSBP3-216ENST00000610401 KANK4Q5T7N3 995 aaPredicted RBP29.94■■■□□ 2.38
SSBP3-216ENST00000610401 CEP164Q9UPV0 1460 aa29.9■■■□□ 2.38
SSBP3-216ENST00000610401 SYNJ1O43426 1573 aa29.87■■■□□ 2.37
SSBP3-216ENST00000610401 VPS8Q8N3P4 1428 aa29.84■■■□□ 2.37
SSBP3-216ENST00000610401 KCNH8Q96L42 1107 aa29.77■■■□□ 2.36
SSBP3-216ENST00000610401 ATP1B4Q9UN42 357 aaPredicted RBP29.77■■■□□ 2.36
SSBP3-216ENST00000610401 BCANQ96GW7 911 aa29.74■■■□□ 2.35
SSBP3-216ENST00000610401 UNC13AQ9UPW8 1703 aa29.74■■■□□ 2.35
SSBP3-216ENST00000610401 HIRIP3Q9BW71 556 aaPredicted RBP29.67■■■□□ 2.34
SSBP3-216ENST00000610401 DHX57Q6P158 1386 aaKnown RBP29.63■■■□□ 2.33
SSBP3-216ENST00000610401 KIF21BO75037 1637 aa29.62■■■□□ 2.33
SSBP3-216ENST00000610401 SUPT16HQ9Y5B9 1047 aaKnown RBP29.62■■■□□ 2.33
SSBP3-216ENST00000610401 BAZ1BQ9UIG0 1483 aaKnown RBP29.61■■■□□ 2.33
SSBP3-216ENST00000610401 P3H3Q8IVL6 736 aa29.6■■■□□ 2.33
SSBP3-216ENST00000610401 ATAD2BQ9ULI0 1458 aa29.53■■■□□ 2.32
SSBP3-216ENST00000610401 FAM50AQ14320 339 aaKnown RBP29.5■■■□□ 2.31
SSBP3-216ENST00000610401 BICRAQ9NZM4 1560 aa29.5■■■□□ 2.31
SSBP3-216ENST00000610401 DDX10Q13206 875 aaKnown RBP29.48■■■□□ 2.31
SSBP3-216ENST00000610401 SIN3AQ96ST3 1273 aa29.46■■■□□ 2.31
SSBP3-216ENST00000610401 ARAP1Q96P48 1450 aa29.39■■■□□ 2.3
SSBP3-216ENST00000610401 MYT1Q01538 1121 aa29.32■■■□□ 2.28
SSBP3-216ENST00000610401 TRIM52Q96A61 297 aa29.31■■■□□ 2.28
SSBP3-216ENST00000610401 CCNB3Q8WWL7 1395 aa29.29■■■□□ 2.28
SSBP3-216ENST00000610401 FKBP8Q14318 412 aa29.28■■■□□ 2.28
SSBP3-216ENST00000610401 TSHZ2Q9NRE2 1034 aa29.25■■■□□ 2.27
SSBP3-216ENST00000610401 RAB3GAP2Q9H2M9 1393 aa29.24■■■□□ 2.27
SSBP3-216ENST00000610401 CLSPNQ9HAW4 1339 aa29.19■■■□□ 2.26
SSBP3-216ENST00000610401 PRXQ9BXM0 1461 aa29.16■■■□□ 2.26
SSBP3-216ENST00000610401 KIF27Q86VH2 1401 aa29.15■■■□□ 2.26
SSBP3-216ENST00000610401 TOP2BQ02880 1626 aa29.13■■■□□ 2.25
SSBP3-216ENST00000610401 PEG3Q9GZU2 1588 aa29.1■■■□□ 2.25
SSBP3-216ENST00000610401 ARHGAP35Q9NRY4 1499 aa29.08■■■□□ 2.24
SSBP3-216ENST00000610401 CUX1P39880 1505 aa29.06■■■□□ 2.24
SSBP3-216ENST00000610401 RRBP1Q9P2E9 1410 aaKnown RBP29.04■■■□□ 2.24
SSBP3-216ENST00000610401 IRX6P78412 446 aaPredicted RBP29.01■■■□□ 2.23
SSBP3-216ENST00000610401 CUX2O14529 1486 aa29■■■□□ 2.23
SSBP3-216ENST00000610401 PHLDB1Q86UU1 1377 aa28.97■■■□□ 2.23
SSBP3-216ENST00000610401 CNGB1Q14028 1251 aaPredicted RBP28.95■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms