RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 DCAF8L2P0C7V8 631 aa20.19■□□□□ 0.82
PCF11-201ENST00000298281 PELP1Q8IZL8 1130 aaKnown RBP19.67■□□□□ 0.74
PCF11-201ENST00000298281 ERICH6Q7L0X2 663 aa19.13■□□□□ 0.65
PCF11-201ENST00000298281 SUPT5HO00267 1087 aaKnown RBP19.05■□□□□ 0.64
PCF11-201ENST00000298281 EHMT2Q96KQ7 1210 aa19.01■□□□□ 0.63
PCF11-201ENST00000298281 CCER1Q8TC90 406 aaPredicted RBP18.8■□□□□ 0.6
PCF11-201ENST00000298281 FAM9AQ8IZU1 332 aaPredicted RBP18.8■□□□□ 0.6
PCF11-201ENST00000298281 APLP2Q06481 763 aa18.72■□□□□ 0.59
PCF11-201ENST00000298281 MYT1Q01538 1121 aa18.66■□□□□ 0.58
PCF11-201ENST00000298281 NISCHQ9Y2I1 1504 aa18.63■□□□□ 0.57
PCF11-201ENST00000298281 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
PCF11-201ENST00000298281 TTBK1Q5TCY1 1321 aaPredicted RBP18.36■□□□□ 0.53
PCF11-201ENST00000298281 ATP1B4Q9UN42 357 aaPredicted RBP18.25■□□□□ 0.51
PCF11-201ENST00000298281 DAXXQ9UER7 740 aaPredicted RBP18.22■□□□□ 0.51
PCF11-201ENST00000298281 NEFLP07196 543 aa18.14■□□□□ 0.49
PCF11-201ENST00000298281 CENPBP07199 599 aaPredicted RBP18.13■□□□□ 0.49
PCF11-201ENST00000298281 RANGAP1P46060 587 aaPredicted RBP18.11■□□□□ 0.49
PCF11-201ENST00000298281 ZEB1P37275 1124 aaPredicted RBP18.07■□□□□ 0.48
PCF11-201ENST00000298281 YTHDC1Q96MU7 727 aaKnown RBP17.99■□□□□ 0.47
PCF11-201ENST00000298281 PCGF6Q9BYE7 350 aa17.96■□□□□ 0.47
PCF11-201ENST00000298281 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
PCF11-201ENST00000298281 CHIC1Q5VXU3 224 aa17.85■□□□□ 0.45
PCF11-201ENST00000298281 SLC4A1APQ9BWU0 796 aaKnown RBP17.78■□□□□ 0.44
PCF11-201ENST00000298281 TRIM41Q8WV44 630 aa17.78■□□□□ 0.44
PCF11-201ENST00000298281 POLR3GLQ9BT43 218 aa17.77■□□□□ 0.44
PCF11-201ENST00000298281 UBTFP17480 764 aaKnown RBP17.69■□□□□ 0.42
PCF11-201ENST00000298281 ZNF316A6NFI3 1004 aaPredicted RBP17.66■□□□□ 0.42
PCF11-201ENST00000298281 CNGB1Q14028 1251 aaPredicted RBP17.62■□□□□ 0.41
PCF11-201ENST00000298281 CLSPNQ9HAW4 1339 aa17.6■□□□□ 0.41
PCF11-201ENST00000298281 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
PCF11-201ENST00000298281 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
PCF11-201ENST00000298281 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.38■□□□□ 0.37
PCF11-201ENST00000298281 HNRNPUL2Q1KMD3 747 aaKnown RBP17.38■□□□□ 0.37
PCF11-201ENST00000298281 BCL11AQ9H165 835 aa17.35■□□□□ 0.37
PCF11-201ENST00000298281 ZBTB47Q9UFB7 747 aaPredicted RBP17.31■□□□□ 0.36
PCF11-201ENST00000298281 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
PCF11-201ENST00000298281 ITGAEP38570 1179 aa17.17■□□□□ 0.34
PCF11-201ENST00000298281 PPARGC1BQ86YN6 1023 aaKnown RBP17.04■□□□□ 0.32
PCF11-201ENST00000298281 BCANQ96GW7 911 aa17■□□□□ 0.31
PCF11-201ENST00000298281 HRCP23327 699 aa16.98■□□□□ 0.31
PCF11-201ENST00000298281 CDK11BP21127 795 aaKnown RBP16.9■□□□□ 0.3
PCF11-201ENST00000298281 CDK11AQ9UQ88 783 aaPredicted RBP16.9■□□□□ 0.3
PCF11-201ENST00000298281 CANXP27824 592 aaKnown RBP16.88■□□□□ 0.29
PCF11-201ENST00000298281 NEFMP07197 916 aa16.82■□□□□ 0.28
PCF11-201ENST00000298281 ANP32BQ92688 251 aaKnown RBP16.81■□□□□ 0.28
PCF11-201ENST00000298281 EIF5BO60841 1220 aaKnown RBP16.75■□□□□ 0.27
PCF11-201ENST00000298281 HSP90AA1P07900 732 aaKnown RBP16.7■□□□□ 0.26
PCF11-201ENST00000298281 DIEXFQ68CQ4 756 aaKnown RBP16.69■□□□□ 0.26
PCF11-201ENST00000298281 FAM50AQ14320 339 aaKnown RBP16.68■□□□□ 0.26
PCF11-201ENST00000298281 TULP1O00294 542 aaPredicted RBP16.67■□□□□ 0.26
PCF11-201ENST00000298281 TRIM52Q96A61 297 aa16.66■□□□□ 0.26
PCF11-201ENST00000298281 PLPPR3Q6T4P5 718 aa16.66■□□□□ 0.26
PCF11-201ENST00000298281 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
PCF11-201ENST00000298281 A0A0G2JS52 829 aa16.63■□□□□ 0.25
PCF11-201ENST00000298281 NCBP3Q53F19 620 aaKnown RBP16.63■□□□□ 0.25
PCF11-201ENST00000298281 ANP32CO43423 234 aa16.58■□□□□ 0.25
PCF11-201ENST00000298281 ZNF326Q5BKZ1 582 aaKnown RBP16.58■□□□□ 0.25
PCF11-201ENST00000298281 GLIPR1L2Q4G1C9 344 aa16.55■□□□□ 0.24
PCF11-201ENST00000298281 SCAF1Q9H7N4 1312 aaKnown RBP16.52■□□□□ 0.23
PCF11-201ENST00000298281 NPM2Q86SE8 214 aaKnown RBP16.52■□□□□ 0.23
PCF11-201ENST00000298281 NEUROD1Q13562 356 aa16.49■□□□□ 0.23
PCF11-201ENST00000298281 ANP32AP39687 249 aaKnown RBP16.45■□□□□ 0.22
PCF11-201ENST00000298281 ARXQ96QS3 562 aa16.43■□□□□ 0.22
PCF11-201ENST00000298281 ESF1Q9H501 851 aaKnown RBP16.43■□□□□ 0.22
PCF11-201ENST00000298281 UPF2Q9HAU5 1272 aaKnown RBP16.36■□□□□ 0.21
PCF11-201ENST00000298281 STAG3Q9UJ98 1225 aa16.33■□□□□ 0.21
PCF11-201ENST00000298281 FBLN2P98095 1184 aa16.3■□□□□ 0.2
PCF11-201ENST00000298281 PLEKHG5O94827 1062 aa16.27■□□□□ 0.19
PCF11-201ENST00000298281 GTF3C3Q9Y5Q9 886 aa16.26■□□□□ 0.19
PCF11-201ENST00000298281 PRM3Q9NNZ6 103 aa16.2■□□□□ 0.18
PCF11-201ENST00000298281 PABPN1Q86U42 306 aaKnown RBP eCLIP16.19■□□□□ 0.18
PCF11-201ENST00000298281 ZBTB7CA1YPR0 619 aa16.18■□□□□ 0.18
PCF11-201ENST00000298281 CHGAP10645 457 aaKnown RBP16.17■□□□□ 0.18
PCF11-201ENST00000298281 CLSTN1O94985 981 aa16.16■□□□□ 0.18
PCF11-201ENST00000298281 TNNT2P45379 298 aaPredicted RBP16.16■□□□□ 0.18
PCF11-201ENST00000298281 ABCC9O60706 1549 aa16.14■□□□□ 0.17
PCF11-201ENST00000298281 ZRSR1Q15695 479 aaKnown RBP16.14■□□□□ 0.17
PCF11-201ENST00000298281 TRIM44Q96DX7 344 aaPredicted RBP16.13■□□□□ 0.17
PCF11-201ENST00000298281 NPHP1O15259 732 aa16.12■□□□□ 0.17
PCF11-201ENST00000298281 TAOK2Q9UL54 1235 aa16.11■□□□□ 0.17
PCF11-201ENST00000298281 TPRNQ4KMQ1 711 aa16.11■□□□□ 0.17
PCF11-201ENST00000298281 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
PCF11-201ENST00000298281 NCLP19338 710 aaKnown RBP16.07■□□□□ 0.16
PCF11-201ENST00000298281 NBR1Q14596 966 aa16.07■□□□□ 0.16
PCF11-201ENST00000298281 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
PCF11-201ENST00000298281 TONSLQ96HA7 1378 aa16.07■□□□□ 0.16
PCF11-201ENST00000298281 C14orf37Q86TY3 774 aa16.06■□□□□ 0.16
PCF11-201ENST00000298281 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.05■□□□□ 0.16
PCF11-201ENST00000298281 HAP1P54257 671 aaPredicted RBP16.05■□□□□ 0.16
PCF11-201ENST00000298281 SALL2Q9Y467 1007 aaPredicted RBP16.04■□□□□ 0.16
PCF11-201ENST00000298281 MYH16Q9H6N6 1097 aa16.04■□□□□ 0.16
PCF11-201ENST00000298281 NPM1P06748 294 aaKnown RBP eCLIP16.03■□□□□ 0.16
PCF11-201ENST00000298281 DNTTIP2Q5QJE6 756 aaKnown RBP16.03■□□□□ 0.16
PCF11-201ENST00000298281 P3H3Q8IVL6 736 aa16.01■□□□□ 0.15
PCF11-201ENST00000298281 ACIN1Q9UKV3 1341 aaKnown RBP16.01■□□□□ 0.15
PCF11-201ENST00000298281 KRI1Q8N9T8 703 aaKnown RBP15.99■□□□□ 0.15
PCF11-201ENST00000298281 AMER1Q5JTC6 1135 aaPredicted RBP15.98■□□□□ 0.15
PCF11-201ENST00000298281 PTMAP06454 111 aaKnown RBP15.97■□□□□ 0.15
PCF11-201ENST00000298281 ARID3CA6NKF2 412 aa15.96■□□□□ 0.15
PCF11-201ENST00000298281 HNRNPUQ00839 825 aaKnown RBP eCLIP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms