RNA–Protein interactions for RNA: ENST00000525990.1

SSBP3-210, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-210ENST00000525990 NISCHQ9Y2I1 1504 aa30.12■■■□□ 2.41
SSBP3-210ENST00000525990 CCDC180Q9P1Z9 1646 aa26.98■■□□□ 1.91
SSBP3-210ENST00000525990 ABCC9O60706 1549 aa26.77■■□□□ 1.88
SSBP3-210ENST00000525990 RB1CC1Q8TDY2 1594 aa25.53■■□□□ 1.68
SSBP3-210ENST00000525990 NACADO15069 1562 aa25.38■■□□□ 1.65
SSBP3-210ENST00000525990 DCAF8L2P0C7V8 631 aa25.28■■□□□ 1.64
SSBP3-210ENST00000525990 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
SSBP3-210ENST00000525990 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
SSBP3-210ENST00000525990 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
SSBP3-210ENST00000525990 PABPN1Q86U42 306 aaKnown RBP eCLIP24.92■■□□□ 1.58
SSBP3-210ENST00000525990 DNAJC5BQ9UF47 199 aa24.91■■□□□ 1.58
SSBP3-210ENST00000525990 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
SSBP3-210ENST00000525990 DCAF1Q9Y4B6 1507 aa24.84■■□□□ 1.57
SSBP3-210ENST00000525990 SCRIBQ14160 1630 aa24.66■■□□□ 1.54
SSBP3-210ENST00000525990 SHROOM4Q9ULL8 1493 aa24.37■■□□□ 1.49
SSBP3-210ENST00000525990 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
SSBP3-210ENST00000525990 EIF4G1Q04637 1599 aaKnown RBP24.19■■□□□ 1.46
SSBP3-210ENST00000525990 CECR2Q9BXF3 1484 aa24.04■■□□□ 1.44
SSBP3-210ENST00000525990 SMARCA4P51532 1647 aa23.51■■□□□ 1.35
SSBP3-210ENST00000525990 NCAPD3P42695 1498 aa23.4■■□□□ 1.34
SSBP3-210ENST00000525990 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
SSBP3-210ENST00000525990 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
SSBP3-210ENST00000525990 SMARCA2P51531 1590 aa23.33■■□□□ 1.33
SSBP3-210ENST00000525990 HMGXB3Q12766 1538 aa23.3■■□□□ 1.32
SSBP3-210ENST00000525990 MROH2BQ7Z745 1585 aa23.27■■□□□ 1.32
SSBP3-210ENST00000525990 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
SSBP3-210ENST00000525990 BAZ1BQ9UIG0 1483 aaKnown RBP23.19■■□□□ 1.3
SSBP3-210ENST00000525990 NESP48681 1621 aa23.1■■□□□ 1.29
SSBP3-210ENST00000525990 WIZO95785 1651 aa23.06■■□□□ 1.28
SSBP3-210ENST00000525990 ERCC6Q03468 1493 aa23.03■■□□□ 1.28
SSBP3-210ENST00000525990 LAMC3Q9Y6N6 1575 aa22.89■■□□□ 1.26
SSBP3-210ENST00000525990 CUX2O14529 1486 aa22.89■■□□□ 1.25
SSBP3-210ENST00000525990 KIF21AQ7Z4S6 1674 aa22.88■■□□□ 1.25
SSBP3-210ENST00000525990 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
SSBP3-210ENST00000525990 RSF1Q96T23 1441 aaPredicted RBP22.8■■□□□ 1.24
SSBP3-210ENST00000525990 TOP2AP11388 1531 aaKnown RBP22.69■■□□□ 1.22
SSBP3-210ENST00000525990 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
SSBP3-210ENST00000525990 PDS5BQ9NTI5 1447 aa22.66■■□□□ 1.22
SSBP3-210ENST00000525990 DNAJC5Q9H3Z4 198 aa22.6■■□□□ 1.21
SSBP3-210ENST00000525990 MRC2Q9UBG0 1479 aa22.54■■□□□ 1.2
SSBP3-210ENST00000525990 CFTRP13569 1480 aa22.51■■□□□ 1.19
SSBP3-210ENST00000525990 WDR62O43379 1518 aa22.5■■□□□ 1.19
SSBP3-210ENST00000525990 FANCD2Q9BXW9 1451 aa22.49■■□□□ 1.19
SSBP3-210ENST00000525990 CEP164Q9UPV0 1460 aa22.48■■□□□ 1.19
SSBP3-210ENST00000525990 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
SSBP3-210ENST00000525990 CCDC88BA6NC98 1476 aa22.42■■□□□ 1.18
SSBP3-210ENST00000525990 URB2Q14146 1524 aaKnown RBP22.34■■□□□ 1.17
SSBP3-210ENST00000525990 TOPBP1Q92547 1522 aa22.11■■□□□ 1.13
SSBP3-210ENST00000525990 DNMBPQ6XZF7 1577 aa22.05■■□□□ 1.12
SSBP3-210ENST00000525990 ZNF608Q9ULD9 1512 aaPredicted RBP22.04■■□□□ 1.12
SSBP3-210ENST00000525990 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
SSBP3-210ENST00000525990 EIF4G3O43432 1585 aaKnown RBP21.96■■□□□ 1.11
SSBP3-210ENST00000525990 ABCC8Q09428 1581 aa21.96■■□□□ 1.11
SSBP3-210ENST00000525990 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
SSBP3-210ENST00000525990 SUPT5HO00267 1087 aaKnown RBP21.95■■□□□ 1.1
SSBP3-210ENST00000525990 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
SSBP3-210ENST00000525990 CUX1P39880 1505 aa21.85■■□□□ 1.09
SSBP3-210ENST00000525990 RAD54L2Q9Y4B4 1467 aa21.84■■□□□ 1.09
SSBP3-210ENST00000525990 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.081e-7■■■■□ 24
SSBP3-210ENST00000525990 OSCARQ8IYS5 282 aa21.82■■□□□ 1.08
SSBP3-210ENST00000525990 CHD1O14646 1710 aa21.82■■□□□ 1.08
SSBP3-210ENST00000525990 FGD5Q6ZNL6 1462 aa21.81■■□□□ 1.08
SSBP3-210ENST00000525990 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
SSBP3-210ENST00000525990 SOGA1O94964 1423 aa21.74■■□□□ 1.07
SSBP3-210ENST00000525990 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
SSBP3-210ENST00000525990 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
SSBP3-210ENST00000525990 RIMBP3CA6NJZ7 1639 aa21.7■■□□□ 1.06
SSBP3-210ENST00000525990 RIMBP3BA6NNM3 1639 aa21.7■■□□□ 1.06
SSBP3-210ENST00000525990 RIMBP3Q9UFD9 1639 aa21.7■■□□□ 1.06
SSBP3-210ENST00000525990 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
SSBP3-210ENST00000525990 SNAPC4Q5SXM2 1469 aa21.62■■□□□ 1.05
SSBP3-210ENST00000525990 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
SSBP3-210ENST00000525990 SYNJ1O43426 1573 aa21.58■■□□□ 1.05
SSBP3-210ENST00000525990 FBLN2P98095 1184 aa21.58■■□□□ 1.05
SSBP3-210ENST00000525990 BIVM-ERCC5R4GMW8 1640 aa21.58■■□□□ 1.04
SSBP3-210ENST00000525990 ABCA5Q8WWZ7 1642 aa21.56■■□□□ 1.04
SSBP3-210ENST00000525990 TOP2BQ02880 1626 aa21.54■■□□□ 1.04
SSBP3-210ENST00000525990 GRIN2BQ13224 1484 aa21.53■■□□□ 1.04
SSBP3-210ENST00000525990 ABCA10Q8WWZ4 1543 aa21.52■■□□□ 1.04
SSBP3-210ENST00000525990 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.03
SSBP3-210ENST00000525990 GAPVD1Q14C86 1478 aa21.51■■□□□ 1.03
SSBP3-210ENST00000525990 WRNQ14191 1432 aaPredicted RBP eCLIP21.48■■□□□ 1.037e-6■■■■■ 31.3
SSBP3-210ENST00000525990 CLASP1Q7Z460 1538 aa21.47■■□□□ 1.03
SSBP3-210ENST00000525990 SYNJ2O15056 1496 aa21.45■■□□□ 1.02
SSBP3-210ENST00000525990 ARAP1Q96P48 1450 aa21.42■■□□□ 1.02
SSBP3-210ENST00000525990 CHMP7Q8WUX9 453 aaPredicted RBP21.41■■□□□ 1.02
SSBP3-210ENST00000525990 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
SSBP3-210ENST00000525990 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
SSBP3-210ENST00000525990 GRIN2AQ12879 1464 aa21.3■■□□□ 1
SSBP3-210ENST00000525990 CEP170Q5SW79 1584 aa21.29■■□□□ 1
SSBP3-210ENST00000525990 ERICH3Q5RHP9 1530 aa21.25■□□□□ 0.99
SSBP3-210ENST00000525990 ERCC6L2Q5T890 1561 aa21.23■□□□□ 0.99
SSBP3-210ENST00000525990 FHAD1B1AJZ9 1412 aa21.21■□□□□ 0.99
SSBP3-210ENST00000525990 NUP160Q12769 1436 aa21.2■□□□□ 0.98
SSBP3-210ENST00000525990 SHROOM2Q13796 1616 aa21.15■□□□□ 0.98
SSBP3-210ENST00000525990 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
SSBP3-210ENST00000525990 TRHP20396 242 aaPredicted RBP21.04■□□□□ 0.96
SSBP3-210ENST00000525990 CUL7Q14999 1698 aa21.04■□□□□ 0.96
SSBP3-210ENST00000525990 KIF27Q86VH2 1401 aa21.02■□□□□ 0.96
SSBP3-210ENST00000525990 IGF1RP08069 1367 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms