RNA–Protein interactions for RNA: ENST00000371319.7

SSBP3-203, Transcript of single stranded DNA binding protein 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP3, Length 1,578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-203ENST00000371319 NISCHQ9Y2I1 1504 aa39.69■■■■□ 3.94
SSBP3-203ENST00000371319 CCDC180Q9P1Z9 1646 aa34.58■■■■□ 3.13
SSBP3-203ENST00000371319 ZCCHC6Q5VYS8 1495 aaKnown RBP33.37■■■□□ 2.93
SSBP3-203ENST00000371319 DCAF1Q9Y4B6 1507 aa32.82■■■□□ 2.84
SSBP3-203ENST00000371319 DCAF8L2P0C7V8 631 aa32.62■■■□□ 2.81
SSBP3-203ENST00000371319 ABCC9O60706 1549 aa32.57■■■□□ 2.8
SSBP3-203ENST00000371319 SHROOM4Q9ULL8 1493 aa32.41■■■□□ 2.78
SSBP3-203ENST00000371319 MYO15BQ96JP2 1530 aa32.38■■■□□ 2.77
SSBP3-203ENST00000371319 NACADO15069 1562 aa32.15■■■□□ 2.74
SSBP3-203ENST00000371319 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
SSBP3-203ENST00000371319 SCRIBQ14160 1630 aa31.82■■■□□ 2.68
SSBP3-203ENST00000371319 UNC13AQ9UPW8 1703 aa31.31■■■□□ 2.6
SSBP3-203ENST00000371319 SUPT5HO00267 1087 aaKnown RBP31.18■■■□□ 2.58
SSBP3-203ENST00000371319 BICRAQ9NZM4 1560 aa30.95■■■□□ 2.55
SSBP3-203ENST00000371319 CECR2Q9BXF3 1484 aa30.85■■■□□ 2.53
SSBP3-203ENST00000371319 RSF1Q96T23 1441 aaPredicted RBP30.82■■■□□ 2.52
SSBP3-203ENST00000371319 PABPN1Q86U42 306 aaKnown RBP eCLIP30.71■■■□□ 2.51
SSBP3-203ENST00000371319 MROH2BQ7Z745 1585 aa30.68■■■□□ 2.5
SSBP3-203ENST00000371319 BAZ1AQ9NRL2 1556 aaPredicted RBP30.62■■■□□ 2.49
SSBP3-203ENST00000371319 SMARCA4P51532 1647 aa30.51■■■□□ 2.47
SSBP3-203ENST00000371319 WIZO95785 1651 aa30.45■■■□□ 2.47
SSBP3-203ENST00000371319 PEG3Q9GZU2 1588 aa30.13■■■□□ 2.41
SSBP3-203ENST00000371319 TOP2AP11388 1531 aaKnown RBP30.12■■■□□ 2.41
SSBP3-203ENST00000371319 EIF4G1Q04637 1599 aaKnown RBP29.97■■■□□ 2.39
SSBP3-203ENST00000371319 ATAD2BQ9ULI0 1458 aa29.96■■■□□ 2.39
SSBP3-203ENST00000371319 CHIC1Q5VXU3 224 aa29.95■■■□□ 2.39
SSBP3-203ENST00000371319 SMARCA2P51531 1590 aa29.92■■■□□ 2.38
SSBP3-203ENST00000371319 CCDC88BA6NC98 1476 aa29.8■■■□□ 2.36
SSBP3-203ENST00000371319 BAZ1BQ9UIG0 1483 aaKnown RBP29.77■■■□□ 2.36
SSBP3-203ENST00000371319 NCAPD3P42695 1498 aa29.66■■■□□ 2.34
SSBP3-203ENST00000371319 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
SSBP3-203ENST00000371319 CC2D2AQ9P2K1 1620 aa29.51■■■□□ 2.31
SSBP3-203ENST00000371319 TRIM41Q8WV44 630 aa29.3■■■□□ 2.28
SSBP3-203ENST00000371319 ABCC8Q09428 1581 aa29.22■■■□□ 2.27
SSBP3-203ENST00000371319 CFTRP13569 1480 aa29.04■■■□□ 2.24
SSBP3-203ENST00000371319 PRDM2Q13029 1718 aa28.98■■■□□ 2.23
SSBP3-203ENST00000371319 WRNQ14191 1432 aaPredicted RBP eCLIP28.97■■■□□ 2.237e-6■■■■■ 31.3
SSBP3-203ENST00000371319 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
SSBP3-203ENST00000371319 CADPSQ9ULU8 1353 aa28.89■■■□□ 2.22
SSBP3-203ENST00000371319 LOC105371045A0A1W2PR82 267 aa28.8■■■□□ 2.2
SSBP3-203ENST00000371319 FAM9AQ8IZU1 332 aaPredicted RBP28.79■■■□□ 2.2
SSBP3-203ENST00000371319 BIVM-ERCC5R4GMW8 1640 aa28.78■■■□□ 2.2
SSBP3-203ENST00000371319 TOP2BQ02880 1626 aa28.77■■■□□ 2.2
SSBP3-203ENST00000371319 DNAJC5BQ9UF47 199 aa28.73■■■□□ 2.19
SSBP3-203ENST00000371319 CUX1P39880 1505 aa28.69■■■□□ 2.18
SSBP3-203ENST00000371319 SOGA1O94964 1423 aa28.68■■■□□ 2.18
SSBP3-203ENST00000371319 NESP48681 1621 aa28.66■■■□□ 2.18
SSBP3-203ENST00000371319 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.18
SSBP3-203ENST00000371319 EEA1Q15075 1411 aa28.6■■■□□ 2.17
SSBP3-203ENST00000371319 FANCD2Q9BXW9 1451 aa28.59■■■□□ 2.17
SSBP3-203ENST00000371319 RUSC2Q8N2Y8 1516 aa28.59■■■□□ 2.17
SSBP3-203ENST00000371319 CSRNP3Q8WYN3 585 aa28.42■■■□□ 2.14
SSBP3-203ENST00000371319 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
SSBP3-203ENST00000371319 DNMBPQ6XZF7 1577 aa28.39■■■□□ 2.14
SSBP3-203ENST00000371319 PDS5BQ9NTI5 1447 aa28.38■■■□□ 2.13
SSBP3-203ENST00000371319 EHMT2Q96KQ7 1210 aa28.37■■■□□ 2.13
SSBP3-203ENST00000371319 KIF21AQ7Z4S6 1674 aa28.35■■■□□ 2.13
SSBP3-203ENST00000371319 FGD5Q6ZNL6 1462 aa28.33■■■□□ 2.13
SSBP3-203ENST00000371319 TOPBP1Q92547 1522 aa28.32■■■□□ 2.12
SSBP3-203ENST00000371319 KIF21BO75037 1637 aa28.29■■■□□ 2.12
SSBP3-203ENST00000371319 URB2Q14146 1524 aaKnown RBP28.27■■■□□ 2.12
SSBP3-203ENST00000371319 GOLGA3Q08378 1498 aa28.24■■■□□ 2.11
SSBP3-203ENST00000371319 KIF27Q86VH2 1401 aa28.22■■■□□ 2.11
SSBP3-203ENST00000371319 POLA1P09884 1462 aaPredicted RBP28.18■■■□□ 2.1
SSBP3-203ENST00000371319 TNIKQ9UKE5 1360 aa28.16■■■□□ 2.1
SSBP3-203ENST00000371319 CUX2O14529 1486 aa28.14■■■□□ 2.1
SSBP3-203ENST00000371319 PRXQ9BXM0 1461 aa28.1■■■□□ 2.09
SSBP3-203ENST00000371319 RAD54L2Q9Y4B4 1467 aa28.1■■■□□ 2.09
SSBP3-203ENST00000371319 RAPGEF2Q9Y4G8 1499 aa28.09■■■□□ 2.09
SSBP3-203ENST00000371319 ABCA10Q8WWZ4 1543 aa28.09■■■□□ 2.09
SSBP3-203ENST00000371319 ERICH3Q5RHP9 1530 aa28.06■■■□□ 2.08
SSBP3-203ENST00000371319 WDR97A6NE52 1622 aa28.06■■■□□ 2.08
SSBP3-203ENST00000371319 MRC2Q9UBG0 1479 aa28.05■■■□□ 2.08
SSBP3-203ENST00000371319 UBTFP17480 764 aaKnown RBP28.03■■■□□ 2.08
SSBP3-203ENST00000371319 CEP162Q5TB80 1403 aa28.02■■■□□ 2.08
SSBP3-203ENST00000371319 IGF1RP08069 1367 aa27.98■■■□□ 2.07
SSBP3-203ENST00000371319 WDR62O43379 1518 aa27.93■■■□□ 2.06
SSBP3-203ENST00000371319 TARBP1Q13395 1621 aaKnown RBP27.92■■■□□ 2.06
SSBP3-203ENST00000371319 ABCA5Q8WWZ7 1642 aa27.88■■■□□ 2.05
SSBP3-203ENST00000371319 ERCC6Q03468 1493 aa27.87■■■□□ 2.05
SSBP3-203ENST00000371319 THOC2Q8NI27 1593 aaKnown RBP27.85■■■□□ 2.05
SSBP3-203ENST00000371319 CARMIL1Q5VZK9 1371 aa27.83■■■□□ 2.05
SSBP3-203ENST00000371319 CUL7Q14999 1698 aa27.79■■■□□ 2.04
SSBP3-203ENST00000371319 TDRD9Q8NDG6 1382 aaKnown RBP27.77■■■□□ 2.04
SSBP3-203ENST00000371319 CLIP1P30622 1438 aa27.77■■■□□ 2.04
SSBP3-203ENST00000371319 GAPVD1Q14C86 1478 aa27.77■■■□□ 2.04
SSBP3-203ENST00000371319 IFT140Q96RY7 1462 aa27.72■■■□□ 2.03
SSBP3-203ENST00000371319 PBRM1Q86U86 1689 aa27.67■■■□□ 2.02
SSBP3-203ENST00000371319 AQRO60306 1485 aaKnown RBP eCLIP27.6■■■□□ 2.011e-7■■■■■ 27.3
SSBP3-203ENST00000371319 ZNF608Q9ULD9 1512 aaPredicted RBP27.59■■■□□ 2.01
SSBP3-203ENST00000371319 RANGAP1P46060 587 aaPredicted RBP27.56■■■□□ 2
SSBP3-203ENST00000371319 VPS8Q8N3P4 1428 aa27.55■■■□□ 2
SSBP3-203ENST00000371319 ARAP1Q96P48 1450 aa27.55■■■□□ 2
SSBP3-203ENST00000371319 PCGF6Q9BYE7 350 aa27.54■■■□□ 2
SSBP3-203ENST00000371319 GRIN2BQ13224 1484 aa27.53■■■□□ 2
SSBP3-203ENST00000371319 CTTNBP2Q8WZ74 1663 aa27.53■■■□□ 2
SSBP3-203ENST00000371319 TRIM26Q12899 539 aaPredicted RBP27.52■■■□□ 2
SSBP3-203ENST00000371319 EIF4G3O43432 1585 aaKnown RBP27.51■■□□□ 1.99
SSBP3-203ENST00000371319 ADAMTS12P58397 1594 aa27.51■■□□□ 1.99
SSBP3-203ENST00000371319 ARHGAP35Q9NRY4 1499 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms