RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 NISCHQ9Y2I1 1504 aa39.39■■■■□ 3.9
PCF11-207ENST00000624931 CCDC180Q9P1Z9 1646 aa34.42■■■■□ 3.1
PCF11-207ENST00000624931 ZCCHC6Q5VYS8 1495 aaKnown RBP33.07■■■□□ 2.88
PCF11-207ENST00000624931 ABCC9O60706 1549 aa32.83■■■□□ 2.85
PCF11-207ENST00000624931 DCAF8L2P0C7V8 631 aa32.63■■■□□ 2.81
PCF11-207ENST00000624931 DCAF1Q9Y4B6 1507 aa32.49■■■□□ 2.79
PCF11-207ENST00000624931 MYO15BQ96JP2 1530 aa32.13■■■□□ 2.73
PCF11-207ENST00000624931 SHROOM4Q9ULL8 1493 aa32.13■■■□□ 2.73
PCF11-207ENST00000624931 NACADO15069 1562 aa32.07■■■□□ 2.72
PCF11-207ENST00000624931 RB1CC1Q8TDY2 1594 aa31.87■■■□□ 2.69
PCF11-207ENST00000624931 SCRIBQ14160 1630 aa31.76■■■□□ 2.67
PCF11-207ENST00000624931 UNC13AQ9UPW8 1703 aa31.35■■■□□ 2.61
PCF11-207ENST00000624931 BICRAQ9NZM4 1560 aa31.01■■■□□ 2.55
PCF11-207ENST00000624931 PABPN1Q86U42 306 aaKnown RBP eCLIP30.92■■■□□ 2.54
PCF11-207ENST00000624931 SUPT5HO00267 1087 aaKnown RBP30.73■■■□□ 2.51
PCF11-207ENST00000624931 CECR2Q9BXF3 1484 aa30.7■■■□□ 2.51
PCF11-207ENST00000624931 RSF1Q96T23 1441 aaPredicted RBP30.49■■■□□ 2.47
PCF11-207ENST00000624931 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
PCF11-207ENST00000624931 BAZ1AQ9NRL2 1556 aaPredicted RBP30.4■■■□□ 2.46
PCF11-207ENST00000624931 SMARCA4P51532 1647 aa30.36■■■□□ 2.45
PCF11-207ENST00000624931 WIZO95785 1651 aa30.25■■■□□ 2.43
PCF11-207ENST00000624931 EIF4G1Q04637 1599 aaKnown RBP30.05■■■□□ 2.4
PCF11-207ENST00000624931 PEG3Q9GZU2 1588 aa29.92■■■□□ 2.38
PCF11-207ENST00000624931 ATAD2BQ9ULI0 1458 aa29.88■■■□□ 2.37
PCF11-207ENST00000624931 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
PCF11-207ENST00000624931 SMARCA2P51531 1590 aa29.82■■■□□ 2.36
PCF11-207ENST00000624931 BAZ1BQ9UIG0 1483 aaKnown RBP29.7■■■□□ 2.35
PCF11-207ENST00000624931 CC2D2AQ9P2K1 1620 aa29.68■■■□□ 2.34
PCF11-207ENST00000624931 NCAPD3P42695 1498 aa29.59■■■□□ 2.33
PCF11-207ENST00000624931 HMGXB3Q12766 1538 aa29.57■■■□□ 2.32
PCF11-207ENST00000624931 CCDC88BA6NC98 1476 aa29.56■■■□□ 2.32
PCF11-207ENST00000624931 CHIC1Q5VXU3 224 aa29.28■■■□□ 2.28
PCF11-207ENST00000624931 DNAJC5BQ9UF47 199 aa29.14■■■□□ 2.25
PCF11-207ENST00000624931 ABCC8Q09428 1581 aa28.97■■■□□ 2.23
PCF11-207ENST00000624931 CFTRP13569 1480 aa28.91■■■□□ 2.22
PCF11-207ENST00000624931 CADPSQ9ULU8 1353 aa28.83■■■□□ 2.21
PCF11-207ENST00000624931 TRIM41Q8WV44 630 aa28.83■■■□□ 2.21
PCF11-207ENST00000624931 PRDM2Q13029 1718 aa28.8■■■□□ 2.2
PCF11-207ENST00000624931 NESP48681 1621 aa28.79■■■□□ 2.2
PCF11-207ENST00000624931 HRCP23327 699 aa28.74■■■□□ 2.19
PCF11-207ENST00000624931 WRNQ14191 1432 aaPredicted RBP eCLIP28.7■■■□□ 2.18
PCF11-207ENST00000624931 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
PCF11-207ENST00000624931 LAMC3Q9Y6N6 1575 aa28.64■■■□□ 2.18
PCF11-207ENST00000624931 FANCD2Q9BXW9 1451 aa28.57■■■□□ 2.16
PCF11-207ENST00000624931 CUX1P39880 1505 aa28.53■■■□□ 2.16
PCF11-207ENST00000624931 TOP2BQ02880 1626 aa28.5■■■□□ 2.15
PCF11-207ENST00000624931 BIVM-ERCC5R4GMW8 1640 aa28.49■■■□□ 2.15
PCF11-207ENST00000624931 KIF21AQ7Z4S6 1674 aa28.44■■■□□ 2.14
PCF11-207ENST00000624931 FAM9AQ8IZU1 332 aaPredicted RBP28.42■■■□□ 2.14
PCF11-207ENST00000624931 CEP164Q9UPV0 1460 aa28.4■■■□□ 2.14
PCF11-207ENST00000624931 PDS5BQ9NTI5 1447 aa28.39■■■□□ 2.14
PCF11-207ENST00000624931 SOGA1O94964 1423 aa28.33■■■□□ 2.13
PCF11-207ENST00000624931 RUSC2Q8N2Y8 1516 aa28.28■■■□□ 2.12
PCF11-207ENST00000624931 DNMBPQ6XZF7 1577 aa28.28■■■□□ 2.12
PCF11-207ENST00000624931 URB2Q14146 1524 aaKnown RBP28.27■■■□□ 2.12
PCF11-207ENST00000624931 TOPBP1Q92547 1522 aa28.25■■■□□ 2.11
PCF11-207ENST00000624931 PCGF6Q9BYE7 350 aa28.25■■■□□ 2.11
PCF11-207ENST00000624931 FGD5Q6ZNL6 1462 aa28.23■■■□□ 2.11
PCF11-207ENST00000624931 LOC105371045A0A1W2PR82 267 aa28.21■■■□□ 2.11
PCF11-207ENST00000624931 ERCC6Q03468 1493 aa28.12■■■□□ 2.09
PCF11-207ENST00000624931 MRC2Q9UBG0 1479 aa28.11■■■□□ 2.09
PCF11-207ENST00000624931 EHMT2Q96KQ7 1210 aa28.11■■■□□ 2.09
PCF11-207ENST00000624931 POLA1P09884 1462 aaPredicted RBP28.11■■■□□ 2.09
PCF11-207ENST00000624931 EEA1Q15075 1411 aa28.08■■■□□ 2.09
PCF11-207ENST00000624931 RAD54L2Q9Y4B4 1467 aa28.05■■■□□ 2.08
PCF11-207ENST00000624931 CUX2O14529 1486 aa28■■■□□ 2.07
PCF11-207ENST00000624931 THOC2Q8NI27 1593 aaKnown RBP28■■■□□ 2.07
PCF11-207ENST00000624931 CSRNP3Q8WYN3 585 aa27.99■■■□□ 2.07
PCF11-207ENST00000624931 WDR62O43379 1518 aa27.98■■■□□ 2.07
PCF11-207ENST00000624931 KIF27Q86VH2 1401 aa27.95■■■□□ 2.06
PCF11-207ENST00000624931 WDR97A6NE52 1622 aa27.92■■■□□ 2.06
PCF11-207ENST00000624931 TRIM26Q12899 539 aaPredicted RBP27.92■■■□□ 2.06
PCF11-207ENST00000624931 ABCA10Q8WWZ4 1543 aa27.91■■■□□ 2.06
PCF11-207ENST00000624931 TARBP1Q13395 1621 aaKnown RBP27.86■■■□□ 2.05
PCF11-207ENST00000624931 KIF21BO75037 1637 aa27.83■■■□□ 2.05
PCF11-207ENST00000624931 GOLGA3Q08378 1498 aa27.78■■■□□ 2.04
PCF11-207ENST00000624931 TDRD9Q8NDG6 1382 aaKnown RBP27.76■■■□□ 2.04
PCF11-207ENST00000624931 ABCA5Q8WWZ7 1642 aa27.76■■■□□ 2.03
PCF11-207ENST00000624931 RAPGEF2Q9Y4G8 1499 aa27.76■■■□□ 2.03
PCF11-207ENST00000624931 PRXQ9BXM0 1461 aa27.74■■■□□ 2.03
PCF11-207ENST00000624931 IGF1RP08069 1367 aa27.74■■■□□ 2.03
PCF11-207ENST00000624931 ZEB1P37275 1124 aaPredicted RBP27.71■■■□□ 2.03
PCF11-207ENST00000624931 IFT140Q96RY7 1462 aa27.7■■■□□ 2.03
PCF11-207ENST00000624931 ZNF608Q9ULD9 1512 aaPredicted RBP27.67■■■□□ 2.02
PCF11-207ENST00000624931 PPARGC1BQ86YN6 1023 aaKnown RBP27.67■■■□□ 2.02
PCF11-207ENST00000624931 GAPVD1Q14C86 1478 aa27.66■■■□□ 2.02
PCF11-207ENST00000624931 UBTFP17480 764 aaKnown RBP27.65■■■□□ 2.02
PCF11-207ENST00000624931 ERICH3Q5RHP9 1530 aa27.65■■■□□ 2.02
PCF11-207ENST00000624931 AQRO60306 1485 aaKnown RBP eCLIP27.63■■■□□ 2.01
PCF11-207ENST00000624931 TNIKQ9UKE5 1360 aa27.61■■■□□ 2.01
PCF11-207ENST00000624931 PBRM1Q86U86 1689 aa27.6■■■□□ 2.01
PCF11-207ENST00000624931 CARMIL1Q5VZK9 1371 aa27.59■■■□□ 2.01
PCF11-207ENST00000624931 EIF4G3O43432 1585 aaKnown RBP27.57■■■□□ 2
PCF11-207ENST00000624931 CUL7Q14999 1698 aa27.56■■■□□ 2
PCF11-207ENST00000624931 CEP162Q5TB80 1403 aa27.52■■■□□ 2
PCF11-207ENST00000624931 GRIN2BQ13224 1484 aa27.47■■□□□ 1.99
PCF11-207ENST00000624931 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
PCF11-207ENST00000624931 RANGAP1P46060 587 aaPredicted RBP27.39■■□□□ 1.98
PCF11-207ENST00000624931 SNAPC4Q5SXM2 1469 aa27.38■■□□□ 1.97
PCF11-207ENST00000624931 FHAD1B1AJZ9 1412 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms