RNA–Protein interactions for RNA: ENST00000523950.5

VEGFA-225, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 954 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-225ENST00000523950 NISCHQ9Y2I1 1504 aa30.46■■■□□ 2.47
VEGFA-225ENST00000523950 CCDC180Q9P1Z9 1646 aa27.15■■□□□ 1.94
VEGFA-225ENST00000523950 ABCC9O60706 1549 aa26.34■■□□□ 1.81
VEGFA-225ENST00000523950 NACADO15069 1562 aa25.48■■□□□ 1.67
VEGFA-225ENST00000523950 RB1CC1Q8TDY2 1594 aa25.48■■□□□ 1.67
VEGFA-225ENST00000523950 ZCCHC6Q5VYS8 1495 aaKnown RBP25.4■■□□□ 1.66
VEGFA-225ENST00000523950 MYO15BQ96JP2 1530 aa25.38■■□□□ 1.65
VEGFA-225ENST00000523950 DCAF1Q9Y4B6 1507 aa25.28■■□□□ 1.64
VEGFA-225ENST00000523950 DCAF8L2P0C7V8 631 aa25.28■■□□□ 1.64
VEGFA-225ENST00000523950 UNC13AQ9UPW8 1703 aa24.89■■□□□ 1.57
VEGFA-225ENST00000523950 BICRAQ9NZM4 1560 aa24.66■■□□□ 1.54
VEGFA-225ENST00000523950 SCRIBQ14160 1630 aa24.65■■□□□ 1.54
VEGFA-225ENST00000523950 PABPN1Q86U42 306 aaKnown RBP eCLIP24.57■■□□□ 1.52
VEGFA-225ENST00000523950 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
VEGFA-225ENST00000523950 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
VEGFA-225ENST00000523950 EIF4G1Q04637 1599 aaKnown RBP24.02■■□□□ 1.44
VEGFA-225ENST00000523950 CC2D2AQ9P2K1 1620 aa23.89■■□□□ 1.42
VEGFA-225ENST00000523950 CECR2Q9BXF3 1484 aa23.7■■□□□ 1.38
VEGFA-225ENST00000523950 SMARCA4P51532 1647 aa23.64■■□□□ 1.38
VEGFA-225ENST00000523950 BAZ1AQ9NRL2 1556 aaPredicted RBP23.64■■□□□ 1.37
VEGFA-225ENST00000523950 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
VEGFA-225ENST00000523950 NCAPD3P42695 1498 aa23.47■■□□□ 1.35
VEGFA-225ENST00000523950 ATAD2BQ9ULI0 1458 aa23.46■■□□□ 1.35
VEGFA-225ENST00000523950 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
VEGFA-225ENST00000523950 MROH2BQ7Z745 1585 aa23.44■■□□□ 1.34
VEGFA-225ENST00000523950 HMGXB3Q12766 1538 aa23.39■■□□□ 1.34
VEGFA-225ENST00000523950 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
VEGFA-225ENST00000523950 WIZO95785 1651 aa23.19■■□□□ 1.3
VEGFA-225ENST00000523950 RSF1Q96T23 1441 aaPredicted RBP23.19■■□□□ 1.3
VEGFA-225ENST00000523950 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
VEGFA-225ENST00000523950 LAMC3Q9Y6N6 1575 aa22.88■■□□□ 1.25
VEGFA-225ENST00000523950 NESP48681 1621 aa22.8■■□□□ 1.24
VEGFA-225ENST00000523950 CADPSQ9ULU8 1353 aa22.76■■□□□ 1.23
VEGFA-225ENST00000523950 ERCC6Q03468 1493 aa22.74■■□□□ 1.23
VEGFA-225ENST00000523950 PDS5BQ9NTI5 1447 aa22.69■■□□□ 1.22
VEGFA-225ENST00000523950 CCDC88BA6NC98 1476 aa22.67■■□□□ 1.22
VEGFA-225ENST00000523950 CFTRP13569 1480 aa22.66■■□□□ 1.22
VEGFA-225ENST00000523950 KIF21AQ7Z4S6 1674 aa22.61■■□□□ 1.21
VEGFA-225ENST00000523950 PRDM2Q13029 1718 aa22.58■■□□□ 1.21
VEGFA-225ENST00000523950 CUX2O14529 1486 aa22.54■■□□□ 1.2
VEGFA-225ENST00000523950 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
VEGFA-225ENST00000523950 THOC2Q8NI27 1593 aaKnown RBP22.54■■□□□ 1.2
VEGFA-225ENST00000523950 FANCD2Q9BXW9 1451 aa22.5■■□□□ 1.19
VEGFA-225ENST00000523950 CEP164Q9UPV0 1460 aa22.49■■□□□ 1.19
VEGFA-225ENST00000523950 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
VEGFA-225ENST00000523950 WDR62O43379 1518 aa22.39■■□□□ 1.17
VEGFA-225ENST00000523950 URB2Q14146 1524 aaKnown RBP22.26■■□□□ 1.15
VEGFA-225ENST00000523950 ABCC8Q09428 1581 aa22.23■■□□□ 1.15
VEGFA-225ENST00000523950 DNMBPQ6XZF7 1577 aa22.16■■□□□ 1.14
VEGFA-225ENST00000523950 TOPBP1Q92547 1522 aa22.15■■□□□ 1.14
VEGFA-225ENST00000523950 IFT140Q96RY7 1462 aa22.03■■□□□ 1.12
VEGFA-225ENST00000523950 CUX1P39880 1505 aa21.99■■□□□ 1.11
VEGFA-225ENST00000523950 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
VEGFA-225ENST00000523950 TARBP1Q13395 1621 aaKnown RBP21.92■■□□□ 1.1
VEGFA-225ENST00000523950 FGD5Q6ZNL6 1462 aa21.91■■□□□ 1.1
VEGFA-225ENST00000523950 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.091e-6■■■■□ 26.4
VEGFA-225ENST00000523950 BIVM-ERCC5R4GMW8 1640 aa21.88■■□□□ 1.09
VEGFA-225ENST00000523950 TOP2BQ02880 1626 aa21.87■■□□□ 1.09
VEGFA-225ENST00000523950 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
VEGFA-225ENST00000523950 SOGA1O94964 1423 aa21.86■■□□□ 1.09
VEGFA-225ENST00000523950 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
VEGFA-225ENST00000523950 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
VEGFA-225ENST00000523950 RAD54L2Q9Y4B4 1467 aa21.82■■□□□ 1.08
VEGFA-225ENST00000523950 SYNJ1O43426 1573 aa21.82■■□□□ 1.08
VEGFA-225ENST00000523950 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
VEGFA-225ENST00000523950 AQRO60306 1485 aaKnown RBP eCLIP21.72■■□□□ 1.073e-9■■■■□ 26.7
VEGFA-225ENST00000523950 DNAJC5Q9H3Z4 198 aa21.69■■□□□ 1.06
VEGFA-225ENST00000523950 TDRD9Q8NDG6 1382 aaKnown RBP21.68■■□□□ 1.06
VEGFA-225ENST00000523950 ABCA5Q8WWZ7 1642 aa21.66■■□□□ 1.06
VEGFA-225ENST00000523950 GRIN2BQ13224 1484 aa21.64■■□□□ 1.05
VEGFA-225ENST00000523950 GAPVD1Q14C86 1478 aa21.63■■□□□ 1.05
VEGFA-225ENST00000523950 PBRM1Q86U86 1689 aa21.63■■□□□ 1.05
VEGFA-225ENST00000523950 MAGI1Q96QZ7 1491 aaPredicted RBP21.6■■□□□ 1.05
VEGFA-225ENST00000523950 SNAPC4Q5SXM2 1469 aa21.57■■□□□ 1.04
VEGFA-225ENST00000523950 OSCARQ8IYS5 282 aa21.55■■□□□ 1.04
VEGFA-225ENST00000523950 CHD1O14646 1710 aa21.55■■□□□ 1.04
VEGFA-225ENST00000523950 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
VEGFA-225ENST00000523950 SYNJ2O15056 1496 aa21.49■■□□□ 1.03
VEGFA-225ENST00000523950 KIF27Q86VH2 1401 aa21.45■■□□□ 1.02
VEGFA-225ENST00000523950 ADAMTS12P58397 1594 aa21.44■■□□□ 1.02
VEGFA-225ENST00000523950 FBLN2P98095 1184 aa21.42■■□□□ 1.02
VEGFA-225ENST00000523950 CHMP7Q8WUX9 453 aaPredicted RBP21.42■■□□□ 1.02
VEGFA-225ENST00000523950 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
VEGFA-225ENST00000523950 GRIN2AQ12879 1464 aa21.35■■□□□ 1.01
VEGFA-225ENST00000523950 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
VEGFA-225ENST00000523950 CUL7Q14999 1698 aa21.34■■□□□ 1.01
VEGFA-225ENST00000523950 CLASP1Q7Z460 1538 aa21.32■■□□□ 1
VEGFA-225ENST00000523950 IGF1RP08069 1367 aa21.29■■□□□ 1
VEGFA-225ENST00000523950 NUP160Q12769 1436 aa21.26■□□□□ 0.99
VEGFA-225ENST00000523950 CEP170Q5SW79 1584 aa21.23■□□□□ 0.99
VEGFA-225ENST00000523950 RIMBP3CA6NJZ7 1639 aa21.22■□□□□ 0.99
VEGFA-225ENST00000523950 RIMBP3BA6NNM3 1639 aa21.22■□□□□ 0.99
VEGFA-225ENST00000523950 RIMBP3Q9UFD9 1639 aa21.22■□□□□ 0.99
VEGFA-225ENST00000523950 ARHGEF11O15085 1522 aa21.22■□□□□ 0.99
VEGFA-225ENST00000523950 CARMIL1Q5VZK9 1371 aa21.19■□□□□ 0.98
VEGFA-225ENST00000523950 RUSC2Q8N2Y8 1516 aa21.17■□□□□ 0.98
VEGFA-225ENST00000523950 SHROOM2Q13796 1616 aa21.12■□□□□ 0.97
VEGFA-225ENST00000523950 EEA1Q15075 1411 aa21.12■□□□□ 0.97
VEGFA-225ENST00000523950 CHIC1Q5VXU3 224 aa21.1■□□□□ 0.97
VEGFA-225ENST00000523950 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms