RNA–Protein interactions for RNA: ENST00000523873.5

VEGFA-224, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 784 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-224ENST00000523873 NISCHQ9Y2I1 1504 aa30.99■■■□□ 2.55
VEGFA-224ENST00000523873 CCDC180Q9P1Z9 1646 aa27.54■■■□□ 2
VEGFA-224ENST00000523873 ABCC9O60706 1549 aa26.81■■□□□ 1.88
VEGFA-224ENST00000523873 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
VEGFA-224ENST00000523873 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
VEGFA-224ENST00000523873 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
VEGFA-224ENST00000523873 NACADO15069 1562 aa25.79■■□□□ 1.72
VEGFA-224ENST00000523873 MYO15BQ96JP2 1530 aa25.62■■□□□ 1.69
VEGFA-224ENST00000523873 DCAF1Q9Y4B6 1507 aa25.58■■□□□ 1.69
VEGFA-224ENST00000523873 UNC13AQ9UPW8 1703 aa25.43■■□□□ 1.66
VEGFA-224ENST00000523873 SCRIBQ14160 1630 aa25.2■■□□□ 1.62
VEGFA-224ENST00000523873 BICRAQ9NZM4 1560 aa25.08■■□□□ 1.61
VEGFA-224ENST00000523873 PABPN1Q86U42 306 aaKnown RBP eCLIP25.07■■□□□ 1.6
VEGFA-224ENST00000523873 SHROOM4Q9ULL8 1493 aa24.67■■□□□ 1.54
VEGFA-224ENST00000523873 DNAJC5BQ9UF47 199 aa24.47■■□□□ 1.51
VEGFA-224ENST00000523873 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
VEGFA-224ENST00000523873 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
VEGFA-224ENST00000523873 CECR2Q9BXF3 1484 aa24.19■■□□□ 1.46
VEGFA-224ENST00000523873 SMARCA4P51532 1647 aa24.07■■□□□ 1.44
VEGFA-224ENST00000523873 BAZ1AQ9NRL2 1556 aaPredicted RBP24■■□□□ 1.43
VEGFA-224ENST00000523873 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
VEGFA-224ENST00000523873 ATAD2BQ9ULI0 1458 aa23.84■■□□□ 1.41
VEGFA-224ENST00000523873 SMARCA2P51531 1590 aa23.81■■□□□ 1.4
VEGFA-224ENST00000523873 PEG3Q9GZU2 1588 aa23.77■■□□□ 1.4
VEGFA-224ENST00000523873 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
VEGFA-224ENST00000523873 WIZO95785 1651 aa23.76■■□□□ 1.39
VEGFA-224ENST00000523873 HMGXB3Q12766 1538 aa23.7■■□□□ 1.38
VEGFA-224ENST00000523873 BAZ1BQ9UIG0 1483 aaKnown RBP23.67■■□□□ 1.38
VEGFA-224ENST00000523873 RSF1Q96T23 1441 aaPredicted RBP23.67■■□□□ 1.38
VEGFA-224ENST00000523873 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
VEGFA-224ENST00000523873 NESP48681 1621 aa23.27■■□□□ 1.32
VEGFA-224ENST00000523873 SUPT5HO00267 1087 aaKnown RBP23.22■■□□□ 1.31
VEGFA-224ENST00000523873 LAMC3Q9Y6N6 1575 aa23.16■■□□□ 1.3
VEGFA-224ENST00000523873 CCDC88BA6NC98 1476 aa23.14■■□□□ 1.29
VEGFA-224ENST00000523873 CADPSQ9ULU8 1353 aa23.08■■□□□ 1.29
VEGFA-224ENST00000523873 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
VEGFA-224ENST00000523873 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
VEGFA-224ENST00000523873 PRDM2Q13029 1718 aa23.01■■□□□ 1.27
VEGFA-224ENST00000523873 CFTRP13569 1480 aa22.98■■□□□ 1.27
VEGFA-224ENST00000523873 PDS5BQ9NTI5 1447 aa22.94■■□□□ 1.26
VEGFA-224ENST00000523873 THOC2Q8NI27 1593 aaKnown RBP22.89■■□□□ 1.26
VEGFA-224ENST00000523873 FANCD2Q9BXW9 1451 aa22.86■■□□□ 1.25
VEGFA-224ENST00000523873 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
VEGFA-224ENST00000523873 MRC2Q9UBG0 1479 aa22.76■■□□□ 1.23
VEGFA-224ENST00000523873 CUX2O14529 1486 aa22.72■■□□□ 1.23
VEGFA-224ENST00000523873 WDR62O43379 1518 aa22.69■■□□□ 1.22
VEGFA-224ENST00000523873 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
VEGFA-224ENST00000523873 TOPBP1Q92547 1522 aa22.54■■□□□ 1.2
VEGFA-224ENST00000523873 DNMBPQ6XZF7 1577 aa22.53■■□□□ 1.2
VEGFA-224ENST00000523873 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
VEGFA-224ENST00000523873 CUX1P39880 1505 aa22.45■■□□□ 1.18
VEGFA-224ENST00000523873 POLA1P09884 1462 aaPredicted RBP22.34■■□□□ 1.17
VEGFA-224ENST00000523873 FGD5Q6ZNL6 1462 aa22.34■■□□□ 1.17
VEGFA-224ENST00000523873 SYNJ1O43426 1573 aa22.33■■□□□ 1.17
VEGFA-224ENST00000523873 BIVM-ERCC5R4GMW8 1640 aa22.31■■□□□ 1.16
VEGFA-224ENST00000523873 IFT140Q96RY7 1462 aa22.31■■□□□ 1.16
VEGFA-224ENST00000523873 TARBP1Q13395 1621 aaKnown RBP22.31■■□□□ 1.16
VEGFA-224ENST00000523873 WRNQ14191 1432 aaPredicted RBP eCLIP22.3■■□□□ 1.161e-6■■■■□ 26.4
VEGFA-224ENST00000523873 RAD54L2Q9Y4B4 1467 aa22.29■■□□□ 1.16
VEGFA-224ENST00000523873 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
VEGFA-224ENST00000523873 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
VEGFA-224ENST00000523873 SOGA1O94964 1423 aa22.23■■□□□ 1.15
VEGFA-224ENST00000523873 WDR97A6NE52 1622 aa22.22■■□□□ 1.15
VEGFA-224ENST00000523873 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
VEGFA-224ENST00000523873 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.143e-9■■■■□ 26.7
VEGFA-224ENST00000523873 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
VEGFA-224ENST00000523873 ABCA10Q8WWZ4 1543 aa22.08■■□□□ 1.13
VEGFA-224ENST00000523873 PBRM1Q86U86 1689 aa22.07■■□□□ 1.12
VEGFA-224ENST00000523873 ABCA5Q8WWZ7 1642 aa22.05■■□□□ 1.12
VEGFA-224ENST00000523873 CHD1O14646 1710 aa21.99■■□□□ 1.11
VEGFA-224ENST00000523873 GAPVD1Q14C86 1478 aa21.98■■□□□ 1.11
VEGFA-224ENST00000523873 SNAPC4Q5SXM2 1469 aa21.96■■□□□ 1.11
VEGFA-224ENST00000523873 GRIN2BQ13224 1484 aa21.95■■□□□ 1.1
VEGFA-224ENST00000523873 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
VEGFA-224ENST00000523873 TRIM41Q8WV44 630 aa21.85■■□□□ 1.09
VEGFA-224ENST00000523873 ADAMTS12P58397 1594 aa21.83■■□□□ 1.09
VEGFA-224ENST00000523873 FBLN2P98095 1184 aa21.83■■□□□ 1.09
VEGFA-224ENST00000523873 DNAJC5Q9H3Z4 198 aa21.83■■□□□ 1.09
VEGFA-224ENST00000523873 ERICH3Q5RHP9 1530 aa21.81■■□□□ 1.08
VEGFA-224ENST00000523873 KIF27Q86VH2 1401 aa21.8■■□□□ 1.08
VEGFA-224ENST00000523873 SYNJ2O15056 1496 aa21.79■■□□□ 1.08
VEGFA-224ENST00000523873 OSCARQ8IYS5 282 aa21.78■■□□□ 1.08
VEGFA-224ENST00000523873 RUSC2Q8N2Y8 1516 aa21.77■■□□□ 1.08
VEGFA-224ENST00000523873 CHMP7Q8WUX9 453 aaPredicted RBP21.75■■□□□ 1.07
VEGFA-224ENST00000523873 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
VEGFA-224ENST00000523873 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
VEGFA-224ENST00000523873 CUL7Q14999 1698 aa21.7■■□□□ 1.06
VEGFA-224ENST00000523873 IGF1RP08069 1367 aa21.69■■□□□ 1.06
VEGFA-224ENST00000523873 GRIN2AQ12879 1464 aa21.69■■□□□ 1.06
VEGFA-224ENST00000523873 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
VEGFA-224ENST00000523873 CLASP1Q7Z460 1538 aa21.64■■□□□ 1.05
VEGFA-224ENST00000523873 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.04
VEGFA-224ENST00000523873 NUP160Q12769 1436 aa21.56■■□□□ 1.04
VEGFA-224ENST00000523873 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
VEGFA-224ENST00000523873 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
VEGFA-224ENST00000523873 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
VEGFA-224ENST00000523873 ARHGEF11O15085 1522 aa21.5■■□□□ 1.03
VEGFA-224ENST00000523873 FAM9AQ8IZU1 332 aaPredicted RBP21.5■■□□□ 1.03
VEGFA-224ENST00000523873 RAPGEF2Q9Y4G8 1499 aa21.47■■□□□ 1.03
VEGFA-224ENST00000523873 SHROOM2Q13796 1616 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms