Protein–RNA interactions for Protein: Q9Y2P8

RCL1, RNA 3'-terminal phosphate cyclase-like protein, humanhuman

Known RBP Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RCL1Q9Y2P8 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RCL1Q9Y2P8 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RCL1Q9Y2P8 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RCL1Q9Y2P8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RCL1Q9Y2P8 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RCL1Q9Y2P8 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RCL1Q9Y2P8 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RCL1Q9Y2P8 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.37■■□□□ 1.01
RCL1Q9Y2P8 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
RCL1Q9Y2P8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RCL1Q9Y2P8 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RCL1Q9Y2P8 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RCL1Q9Y2P8 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RCL1Q9Y2P8 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.35■■□□□ 1.01
RCL1Q9Y2P8 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC21.34■■□□□ 1.01
RCL1Q9Y2P8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RCL1Q9Y2P8 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RCL1Q9Y2P8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RCL1Q9Y2P8 AC135731.1-201ENST00000569415 2548 ntBASIC21.33■■□□□ 1.01
RCL1Q9Y2P8 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.33■■□□□ 1.01
RCL1Q9Y2P8 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RCL1Q9Y2P8 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RCL1Q9Y2P8 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RCL1Q9Y2P8 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.33■■□□□ 1
RCL1Q9Y2P8 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RCL1Q9Y2P8 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.32■■□□□ 1
RCL1Q9Y2P8 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RCL1Q9Y2P8 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RCL1Q9Y2P8 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RCL1Q9Y2P8 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
RCL1Q9Y2P8 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RCL1Q9Y2P8 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
RCL1Q9Y2P8 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
RCL1Q9Y2P8 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RCL1Q9Y2P8 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC21.3■■□□□ 1
RCL1Q9Y2P8 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RCL1Q9Y2P8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.3■■□□□ 1
RCL1Q9Y2P8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RCL1Q9Y2P8 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.29■■□□□ 1
RCL1Q9Y2P8 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RCL1Q9Y2P8 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.29■■□□□ 1
RCL1Q9Y2P8 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RCL1Q9Y2P8 AC006077.2-201ENST00000623591 457 ntBASIC21.28■■□□□ 1
RCL1Q9Y2P8 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RCL1Q9Y2P8 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
RCL1Q9Y2P8 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
RCL1Q9Y2P8 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.27■□□□□ 0.99
RCL1Q9Y2P8 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RCL1Q9Y2P8 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.26■□□□□ 0.99
RCL1Q9Y2P8 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RCL1Q9Y2P8 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RCL1Q9Y2P8 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RCL1Q9Y2P8 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RCL1Q9Y2P8 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RCL1Q9Y2P8 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
RCL1Q9Y2P8 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RCL1Q9Y2P8 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RCL1Q9Y2P8 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RCL1Q9Y2P8 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.22■□□□□ 0.99
RCL1Q9Y2P8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RCL1Q9Y2P8 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RCL1Q9Y2P8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.2■□□□□ 0.98
RCL1Q9Y2P8 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RCL1Q9Y2P8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RCL1Q9Y2P8 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RCL1Q9Y2P8 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RCL1Q9Y2P8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RCL1Q9Y2P8 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RCL1Q9Y2P8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RCL1Q9Y2P8 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RCL1Q9Y2P8 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RCL1Q9Y2P8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RCL1Q9Y2P8 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.15■□□□□ 0.98
RCL1Q9Y2P8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RCL1Q9Y2P8 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RCL1Q9Y2P8 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RCL1Q9Y2P8 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RCL1Q9Y2P8 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.13■□□□□ 0.97
RCL1Q9Y2P8 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
RCL1Q9Y2P8 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RCL1Q9Y2P8 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RCL1Q9Y2P8 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RCL1Q9Y2P8 DYNLL1-208ENST00000550178 581 ntBASIC21.12■□□□□ 0.97
RCL1Q9Y2P8 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.12■□□□□ 0.97
RCL1Q9Y2P8 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RCL1Q9Y2P8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RCL1Q9Y2P8 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms