Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
PRKDCP78527 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKDCP78527 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKDCP78527 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PRKDCP78527 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PRKDCP78527 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PRKDCP78527 AL033527.3-201ENST00000566366 1196 ntBASIC19.83■□□□□ 0.77
PRKDCP78527 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PRKDCP78527 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PRKDCP78527 AL035685.1-201ENST00000636663 812 ntBASIC19.82■□□□□ 0.76
PRKDCP78527 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.82■□□□□ 0.76
PRKDCP78527 AC008813.1-201ENST00000536597 885 ntBASIC19.81■□□□□ 0.76
PRKDCP78527 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.81■□□□□ 0.76
PRKDCP78527 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PRKDCP78527 RARRES2P1-201ENST00000474487 481 ntBASIC19.8■□□□□ 0.76
PRKDCP78527 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.8■□□□□ 0.76
PRKDCP78527 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC19.8■□□□□ 0.76
PRKDCP78527 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC19.8■□□□□ 0.76
PRKDCP78527 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.8■□□□□ 0.76
PRKDCP78527 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PRKDCP78527 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PRKDCP78527 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.78■□□□□ 0.76
PRKDCP78527 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PRKDCP78527 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
PRKDCP78527 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
PRKDCP78527 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
PRKDCP78527 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.77■□□□□ 0.76
PRKDCP78527 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.77■□□□□ 0.75
PRKDCP78527 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
PRKDCP78527 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PRKDCP78527 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PRKDCP78527 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PRKDCP78527 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PRKDCP78527 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.75■□□□□ 0.75
PRKDCP78527 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.74■□□□□ 0.75
PRKDCP78527 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PRKDCP78527 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.74■□□□□ 0.75
PRKDCP78527 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PRKDCP78527 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.73■□□□□ 0.75
PRKDCP78527 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
PRKDCP78527 TSPY13P-201ENST00000338964 914 ntBASIC19.72■□□□□ 0.75
PRKDCP78527 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.72■□□□□ 0.75
PRKDCP78527 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PRKDCP78527 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.7■□□□□ 0.74
PRKDCP78527 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PRKDCP78527 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PRKDCP78527 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC19.69■□□□□ 0.74
PRKDCP78527 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.69■□□□□ 0.74
PRKDCP78527 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PRKDCP78527 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PRKDCP78527 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.68■□□□□ 0.74
PRKDCP78527 AL451085.2-201ENST00000605085 799 ntBASIC19.68■□□□□ 0.74
PRKDCP78527 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
PRKDCP78527 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKDCP78527 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PRKDCP78527 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKDCP78527 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKDCP78527 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PRKDCP78527 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PRKDCP78527 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKDCP78527 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKDCP78527 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.65■□□□□ 0.74
PRKDCP78527 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PRKDCP78527 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.63■□□□□ 0.73
PRKDCP78527 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.63■□□□□ 0.73
PRKDCP78527 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PRKDCP78527 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PRKDCP78527 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PRKDCP78527 AC004987.1-201ENST00000428627 508 ntBASIC19.61■□□□□ 0.73
PRKDCP78527 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.61■□□□□ 0.73
PRKDCP78527 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.61■□□□□ 0.73
PRKDCP78527 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC19.6■□□□□ 0.73
PRKDCP78527 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PRKDCP78527 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PRKDCP78527 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PRKDCP78527 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PRKDCP78527 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PRKDCP78527 GUK1-208ENST00000366728 842 ntTSL 2 BASIC19.59■□□□□ 0.73
PRKDCP78527 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PRKDCP78527 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKDCP78527 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKDCP78527 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PRKDCP78527 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.57■□□□□ 0.72
PRKDCP78527 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PRKDCP78527 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
PRKDCP78527 ATP5G2P3-201ENST00000429083 425 ntBASIC19.56■□□□□ 0.72
PRKDCP78527 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.56■□□□□ 0.72
PRKDCP78527 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.55■□□□□ 0.72
PRKDCP78527 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.55■□□□□ 0.72
PRKDCP78527 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKDCP78527 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.55■□□□□ 0.72
PRKDCP78527 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.55■□□□□ 0.72
PRKDCP78527 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
PRKDCP78527 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PRKDCP78527 U85056.1-201ENST00000616429 682 ntBASIC19.54■□□□□ 0.72
PRKDCP78527 MIR935-201ENST00000401179 91 ntBASIC19.53■□□□□ 0.72
PRKDCP78527 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC19.53■□□□□ 0.72
PRKDCP78527 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRKDCP78527 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRKDCP78527 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms