Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 MIR4449-201ENST00000578365 66 ntBASIC30.56■■■□□ 2.48
COL11A1P12107 AL161658.1-201ENST00000623641 1967 ntBASIC30.56■■■□□ 2.48
COL11A1P12107 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL11A1P12107 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL11A1P12107 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
COL11A1P12107 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.52■■■□□ 2.48
COL11A1P12107 LINC01971-201ENST00000617888 1048 ntBASIC30.52■■■□□ 2.48
COL11A1P12107 DUX4L11-201ENST00000611504 1267 ntBASIC30.51■■■□□ 2.47
COL11A1P12107 DUX4L12-201ENST00000614593 1267 ntBASIC30.51■■■□□ 2.47
COL11A1P12107 DUX4L14-201ENST00000621227 1267 ntBASIC30.51■■■□□ 2.47
COL11A1P12107 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.51■■■□□ 2.47
COL11A1P12107 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL11A1P12107 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.5■■■□□ 2.47
COL11A1P12107 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.5■■■□□ 2.47
COL11A1P12107 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.5■■■□□ 2.47
COL11A1P12107 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
COL11A1P12107 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.49■■■□□ 2.47
COL11A1P12107 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL11A1P12107 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
COL11A1P12107 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.48■■■□□ 2.47
COL11A1P12107 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL11A1P12107 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL11A1P12107 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
COL11A1P12107 MIR639-201ENST00000384974 98 ntBASIC30.46■■■□□ 2.47
COL11A1P12107 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
COL11A1P12107 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.45■■■□□ 2.47
COL11A1P12107 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
COL11A1P12107 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
COL11A1P12107 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
COL11A1P12107 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
COL11A1P12107 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.43■■■□□ 2.46
COL11A1P12107 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL11A1P12107 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
COL11A1P12107 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL11A1P12107 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL11A1P12107 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
COL11A1P12107 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.41■■■□□ 2.46
COL11A1P12107 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
COL11A1P12107 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.4■■■□□ 2.46
COL11A1P12107 EI24-212ENST00000615917 1407 ntTSL 2 BASIC30.4■■■□□ 2.46
COL11A1P12107 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.4■■■□□ 2.46
COL11A1P12107 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL11A1P12107 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.38■■■□□ 2.45
COL11A1P12107 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL11A1P12107 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
COL11A1P12107 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL11A1P12107 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL11A1P12107 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.36■■■□□ 2.45
COL11A1P12107 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL11A1P12107 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL11A1P12107 AC010864.1-201ENST00000609407 1511 ntBASIC30.34■■■□□ 2.45
COL11A1P12107 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
COL11A1P12107 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL11A1P12107 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.32■■■□□ 2.44
COL11A1P12107 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL11A1P12107 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL11A1P12107 LINC00273-201ENST00000539813 1452 ntBASIC30.32■■■□□ 2.44
COL11A1P12107 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.31■■■□□ 2.44
COL11A1P12107 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L13-201ENST00000554103 1267 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L15-201ENST00000611059 1267 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L23-201ENST00000615195 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L24-201ENST00000617576 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L22-201ENST00000618238 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L20-201ENST00000619712 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L21-201ENST00000622058 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L10-201ENST00000622460 1267 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 DUX4L25-201ENST00000624915 1269 ntBASIC30.3■■■□□ 2.44
COL11A1P12107 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL11A1P12107 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.29■■■□□ 2.44
COL11A1P12107 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.29■■■□□ 2.44
COL11A1P12107 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL11A1P12107 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.28■■■□□ 2.44
COL11A1P12107 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL11A1P12107 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
COL11A1P12107 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.27■■■□□ 2.44
COL11A1P12107 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL11A1P12107 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL11A1P12107 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.25■■■□□ 2.43
COL11A1P12107 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.25■■■□□ 2.43
COL11A1P12107 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
COL11A1P12107 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
COL11A1P12107 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL11A1P12107 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
COL11A1P12107 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
COL11A1P12107 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL11A1P12107 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
COL11A1P12107 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL11A1P12107 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL11A1P12107 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.19■■■□□ 2.42
COL11A1P12107 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.19■■■□□ 2.42
COL11A1P12107 HSD17B1P1-201ENST00000590052 955 ntBASIC30.19■■■□□ 2.42
COL11A1P12107 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
COL11A1P12107 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.18■■■□□ 2.42
COL11A1P12107 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL11A1P12107 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.17■■■□□ 2.42
COL11A1P12107 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
COL11A1P12107 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL11A1P12107 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL11A1P12107 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms