Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC32.88■■■□□ 2.85
COL4A1P02462 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC32.87■■■□□ 2.85
COL4A1P02462 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
COL4A1P02462 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL4A1P02462 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
COL4A1P02462 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC32.85■■■□□ 2.85
COL4A1P02462 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC32.85■■■□□ 2.85
COL4A1P02462 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC32.85■■■□□ 2.85
COL4A1P02462 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC32.85■■■□□ 2.85
COL4A1P02462 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.84■■■□□ 2.85
COL4A1P02462 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
COL4A1P02462 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
COL4A1P02462 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC32.8■■■□□ 2.84
COL4A1P02462 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC32.8■■■□□ 2.84
COL4A1P02462 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC32.8■■■□□ 2.84
COL4A1P02462 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
COL4A1P02462 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.79■■■□□ 2.84
COL4A1P02462 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
COL4A1P02462 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC32.78■■■□□ 2.84
COL4A1P02462 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC32.78■■■□□ 2.84
COL4A1P02462 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
COL4A1P02462 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC32.78■■■□□ 2.84
COL4A1P02462 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC32.76■■■□□ 2.84
COL4A1P02462 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC32.76■■■□□ 2.83
COL4A1P02462 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
COL4A1P02462 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL4A1P02462 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL4A1P02462 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL4A1P02462 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
COL4A1P02462 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC32.72■■■□□ 2.83
COL4A1P02462 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.71■■■□□ 2.83
COL4A1P02462 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
COL4A1P02462 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.7■■■□□ 2.83
COL4A1P02462 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL4A1P02462 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL4A1P02462 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.69■■■□□ 2.82
COL4A1P02462 AGPS-202ENST00000409888 815 ntTSL 4 BASIC32.69■■■□□ 2.82
COL4A1P02462 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
COL4A1P02462 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC32.67■■■□□ 2.82
COL4A1P02462 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A1P02462 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A1P02462 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A1P02462 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
COL4A1P02462 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC32.65■■■□□ 2.82
COL4A1P02462 HSD17B1P1-201ENST00000590052 955 ntBASIC32.65■■■□□ 2.82
COL4A1P02462 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
COL4A1P02462 EI24-212ENST00000615917 1407 ntTSL 2 BASIC32.64■■■□□ 2.82
COL4A1P02462 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
COL4A1P02462 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L13-201ENST00000554103 1267 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L15-201ENST00000611059 1267 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L23-201ENST00000615195 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L24-201ENST00000617576 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L22-201ENST00000618238 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L20-201ENST00000619712 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L21-201ENST00000622058 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L10-201ENST00000622460 1267 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 DUX4L25-201ENST00000624915 1269 ntBASIC32.62■■■□□ 2.81
COL4A1P02462 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC32.62■■■□□ 2.81
COL4A1P02462 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL4A1P02462 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
COL4A1P02462 AC010864.1-201ENST00000609407 1511 ntBASIC32.61■■■□□ 2.81
COL4A1P02462 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC32.6■■■□□ 2.81
COL4A1P02462 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL4A1P02462 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.59■■■□□ 2.81
COL4A1P02462 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.59■■■□□ 2.81
COL4A1P02462 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
COL4A1P02462 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
COL4A1P02462 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
COL4A1P02462 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC32.57■■■□□ 2.8
COL4A1P02462 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
COL4A1P02462 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC32.56■■■□□ 2.8
COL4A1P02462 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
COL4A1P02462 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC32.55■■■□□ 2.8
COL4A1P02462 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
COL4A1P02462 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.53■■■□□ 2.8
COL4A1P02462 CHML-204ENST00000638121 920 ntTSL 2 BASIC32.53■■■□□ 2.8
COL4A1P02462 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.52■■■□□ 2.8
COL4A1P02462 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC32.52■■■□□ 2.8
COL4A1P02462 LINC00273-201ENST00000539813 1452 ntBASIC32.52■■■□□ 2.8
COL4A1P02462 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC32.51■■■□□ 2.79
COL4A1P02462 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL4A1P02462 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL4A1P02462 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
COL4A1P02462 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC32.5■■■□□ 2.79
COL4A1P02462 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
COL4A1P02462 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.47■■■□□ 2.79
COL4A1P02462 BRD4-212ENST00000630599 726 ntTSL 2 BASIC32.47■■■□□ 2.79
COL4A1P02462 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL4A1P02462 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC32.46■■■□□ 2.79
COL4A1P02462 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
COL4A1P02462 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
COL4A1P02462 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.44■■■□□ 2.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms