Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
USH2AO75445 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
USH2AO75445 MIR935-201ENST00000401179 91 ntBASIC12.22□□□□□ -0.45
USH2AO75445 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
USH2AO75445 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC12.21□□□□□ -0.45
USH2AO75445 AL035685.1-201ENST00000636663 812 ntBASIC12.21□□□□□ -0.45
USH2AO75445 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
USH2AO75445 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
USH2AO75445 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
USH2AO75445 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC12.2□□□□□ -0.46
USH2AO75445 AL451085.2-201ENST00000605085 799 ntBASIC12.2□□□□□ -0.46
USH2AO75445 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
USH2AO75445 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC12.2□□□□□ -0.46
USH2AO75445 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
USH2AO75445 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC12.19□□□□□ -0.46
USH2AO75445 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC12.19□□□□□ -0.46
USH2AO75445 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
USH2AO75445 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
USH2AO75445 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
USH2AO75445 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC12.18□□□□□ -0.46
USH2AO75445 CEP120-209ENST00000515110 606 ntTSL 3 BASIC12.17□□□□□ -0.46
USH2AO75445 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
USH2AO75445 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
USH2AO75445 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
USH2AO75445 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
USH2AO75445 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
USH2AO75445 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
USH2AO75445 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
USH2AO75445 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC12.15□□□□□ -0.46
USH2AO75445 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
USH2AO75445 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
USH2AO75445 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC12.15□□□□□ -0.46
USH2AO75445 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC12.15□□□□□ -0.46
USH2AO75445 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
USH2AO75445 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
USH2AO75445 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
USH2AO75445 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC12.14□□□□□ -0.47
USH2AO75445 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC12.14□□□□□ -0.47
USH2AO75445 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
USH2AO75445 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
USH2AO75445 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
USH2AO75445 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC12.14□□□□□ -0.47
USH2AO75445 U85056.1-201ENST00000616429 682 ntBASIC12.14□□□□□ -0.47
USH2AO75445 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 TPT1-202ENST00000379055 948 ntTSL 2 BASIC12.13□□□□□ -0.47
USH2AO75445 AC004987.1-201ENST00000428627 508 ntBASIC12.13□□□□□ -0.47
USH2AO75445 CHML-204ENST00000638121 920 ntTSL 2 BASIC12.13□□□□□ -0.47
USH2AO75445 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
USH2AO75445 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC12.12□□□□□ -0.47
USH2AO75445 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
USH2AO75445 TSPY13P-201ENST00000338964 914 ntBASIC12.12□□□□□ -0.47
USH2AO75445 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
USH2AO75445 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC12.12□□□□□ -0.47
USH2AO75445 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
USH2AO75445 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
USH2AO75445 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
USH2AO75445 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC12.11□□□□□ -0.47
USH2AO75445 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
USH2AO75445 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
USH2AO75445 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
USH2AO75445 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC12.1□□□□□ -0.47
USH2AO75445 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
USH2AO75445 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
USH2AO75445 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
USH2AO75445 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
USH2AO75445 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC12.08□□□□□ -0.48
USH2AO75445 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC12.08□□□□□ -0.48
USH2AO75445 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
USH2AO75445 ATP5G2P3-201ENST00000429083 425 ntBASIC12.07□□□□□ -0.48
USH2AO75445 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
USH2AO75445 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
USH2AO75445 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
USH2AO75445 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
USH2AO75445 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC12.06□□□□□ -0.48
USH2AO75445 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
USH2AO75445 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
USH2AO75445 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC12.06□□□□□ -0.48
USH2AO75445 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC12.05□□□□□ -0.48
USH2AO75445 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC12.05□□□□□ -0.48
USH2AO75445 CHST11-202ENST00000546689 756 ntTSL 2 BASIC12.05□□□□□ -0.48
USH2AO75445 HYI-213ENST00000583037 1322 ntTSL 5 BASIC12.05□□□□□ -0.48
USH2AO75445 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
USH2AO75445 TRIR-205ENST00000592273 783 ntTSL 3 BASIC12.05□□□□□ -0.48
USH2AO75445 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
USH2AO75445 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC12.05□□□□□ -0.48
USH2AO75445 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
USH2AO75445 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
USH2AO75445 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
USH2AO75445 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC12.04□□□□□ -0.48
USH2AO75445 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC12.04□□□□□ -0.48
USH2AO75445 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
USH2AO75445 AC022413.1-201ENST00000624602 984 ntBASIC12.04□□□□□ -0.48
USH2AO75445 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
USH2AO75445 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC12.03□□□□□ -0.48
USH2AO75445 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
USH2AO75445 GUK1-208ENST00000366728 842 ntTSL 2 BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms