Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
PTCD1O75127 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
PTCD1O75127 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
PTCD1O75127 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
PTCD1O75127 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
PTCD1O75127 HSD17B1P1-201ENST00000590052 955 ntBASIC34.31■■■■□ 3.08
PTCD1O75127 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC34.31■■■■□ 3.08
PTCD1O75127 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
PTCD1O75127 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC34.3■■■■□ 3.08
PTCD1O75127 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC34.3■■■■□ 3.08
PTCD1O75127 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC34.29■■■■□ 3.08
PTCD1O75127 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC34.28■■■■□ 3.08
PTCD1O75127 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC34.28■■■■□ 3.08
PTCD1O75127 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
PTCD1O75127 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC34.26■■■■□ 3.08
PTCD1O75127 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
PTCD1O75127 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
PTCD1O75127 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC34.24■■■■□ 3.07
PTCD1O75127 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC34.24■■■■□ 3.07
PTCD1O75127 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
PTCD1O75127 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
PTCD1O75127 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC34.21■■■■□ 3.07
PTCD1O75127 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L13-201ENST00000554103 1267 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L15-201ENST00000611059 1267 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L23-201ENST00000615195 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L24-201ENST00000617576 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L22-201ENST00000618238 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L20-201ENST00000619712 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L21-201ENST00000622058 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L10-201ENST00000622460 1267 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 DUX4L25-201ENST00000624915 1269 ntBASIC34.21■■■■□ 3.07
PTCD1O75127 METRNL-202ENST00000570778 967 ntTSL 5 BASIC34.2■■■■□ 3.07
PTCD1O75127 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.2■■■■□ 3.07
PTCD1O75127 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
PTCD1O75127 EI24-212ENST00000615917 1407 ntTSL 2 BASIC34.2■■■■□ 3.06
PTCD1O75127 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
PTCD1O75127 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC34.19■■■■□ 3.06
PTCD1O75127 ABHD17AP3-201ENST00000503096 1137 ntBASIC34.19■■■■□ 3.06
PTCD1O75127 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC34.19■■■■□ 3.06
PTCD1O75127 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC34.17■■■■□ 3.06
PTCD1O75127 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
PTCD1O75127 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC34.17■■■■□ 3.06
PTCD1O75127 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
PTCD1O75127 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
PTCD1O75127 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
PTCD1O75127 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC34.14■■■■□ 3.06
PTCD1O75127 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC34.14■■■■□ 3.06
PTCD1O75127 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
PTCD1O75127 AL161658.1-201ENST00000623641 1967 ntBASIC34.13■■■■□ 3.05
PTCD1O75127 HES6-205ENST00000409356 528 ntTSL 2 BASIC34.13■■■■□ 3.05
PTCD1O75127 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
PTCD1O75127 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
PTCD1O75127 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC34.11■■■■□ 3.05
PTCD1O75127 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
PTCD1O75127 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
PTCD1O75127 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
PTCD1O75127 CHML-204ENST00000638121 920 ntTSL 2 BASIC34.11■■■■□ 3.05
PTCD1O75127 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC34.1■■■■□ 3.05
PTCD1O75127 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
PTCD1O75127 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
PTCD1O75127 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PTCD1O75127 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
PTCD1O75127 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC34.09■■■■□ 3.05
PTCD1O75127 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC34.09■■■■□ 3.05
PTCD1O75127 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PTCD1O75127 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC34.08■■■■□ 3.05
PTCD1O75127 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC34.08■■■■□ 3.05
PTCD1O75127 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC34.08■■■■□ 3.05
PTCD1O75127 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC34.08■■■■□ 3.05
PTCD1O75127 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
PTCD1O75127 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.03■■■■□ 3.04
PTCD1O75127 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC34.02■■■■□ 3.04
PTCD1O75127 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
PTCD1O75127 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
PTCD1O75127 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC34■■■■□ 3.03
PTCD1O75127 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC33.99■■■■□ 3.03
PTCD1O75127 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC33.99■■■■□ 3.03
PTCD1O75127 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC33.97■■■■□ 3.03
PTCD1O75127 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
PTCD1O75127 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC33.94■■■■□ 3.02
PTCD1O75127 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC33.94■■■■□ 3.02
PTCD1O75127 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.94■■■■□ 3.02
PTCD1O75127 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC33.94■■■■□ 3.02
PTCD1O75127 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC33.94■■■■□ 3.02
PTCD1O75127 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC33.93■■■■□ 3.02
PTCD1O75127 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC33.93■■■■□ 3.02
PTCD1O75127 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC33.93■■■■□ 3.02
PTCD1O75127 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
PTCD1O75127 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC33.91■■■■□ 3.02
PTCD1O75127 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
PTCD1O75127 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC33.9■■■■□ 3.02
PTCD1O75127 CHST11-202ENST00000546689 756 ntTSL 2 BASIC33.9■■■■□ 3.02
PTCD1O75127 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC33.9■■■■□ 3.02
PTCD1O75127 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
PTCD1O75127 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
PTCD1O75127 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
PTCD1O75127 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
PTCD1O75127 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC33.87■■■■□ 3.01
PTCD1O75127 SRP68-213ENST00000629930 165 ntTSL 5 BASIC33.87■■■■□ 3.01
Retrieved 100 of 98,524 protein–RNA pairs in 210.2 ms