Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LSM1O15116 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LSM1O15116 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.78■□□□□ 0.76
LSM1O15116 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.77■□□□□ 0.76
LSM1O15116 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.77■□□□□ 0.76
LSM1O15116 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.77■□□□□ 0.76
LSM1O15116 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
LSM1O15116 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.77■□□□□ 0.76
LSM1O15116 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.77■□□□□ 0.76
LSM1O15116 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LSM1O15116 AC005837.3-201ENST00000612163 286 ntBASIC19.77■□□□□ 0.76
LSM1O15116 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
LSM1O15116 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.77■□□□□ 0.76
LSM1O15116 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LSM1O15116 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LSM1O15116 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LSM1O15116 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LSM1O15116 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.76■□□□□ 0.75
LSM1O15116 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.76■□□□□ 0.75
LSM1O15116 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.76■□□□□ 0.75
LSM1O15116 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 AC010141.2-201ENST00000452426 721 ntBASIC19.76■□□□□ 0.75
LSM1O15116 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.76■□□□□ 0.75
LSM1O15116 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.76■□□□□ 0.75
LSM1O15116 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LSM1O15116 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LSM1O15116 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LSM1O15116 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM1O15116 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.75■□□□□ 0.75
LSM1O15116 AC245052.3-201ENST00000450182 901 ntBASIC19.75■□□□□ 0.75
LSM1O15116 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM1O15116 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.75■□□□□ 0.75
LSM1O15116 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LSM1O15116 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM1O15116 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.75■□□□□ 0.75
LSM1O15116 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LSM1O15116 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.74■□□□□ 0.75
LSM1O15116 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LSM1O15116 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.74■□□□□ 0.75
LSM1O15116 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LSM1O15116 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.73■□□□□ 0.75
LSM1O15116 LINC02228-203ENST00000641970 1355 ntBASIC19.73■□□□□ 0.75
LSM1O15116 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.73■□□□□ 0.75
LSM1O15116 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LSM1O15116 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms