RNA–Protein interactions for RNA: ENST00000456150.5

CSPG5-203, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 1 (best) BASIC

Gene CSPG5, Length 2,089 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-203ENST00000456150 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
CSPG5-203ENST00000456150 CCDC180Q9P1Z9 1646 aa37.17■■■■□ 3.54
CSPG5-203ENST00000456150 ZCCHC6Q5VYS8 1495 aaKnown RBP35.84■■■■□ 3.33
CSPG5-203ENST00000456150 SHROOM4Q9ULL8 1493 aa35.6■■■■□ 3.29
CSPG5-203ENST00000456150 DCAF8L2P0C7V8 631 aa35.42■■■■□ 3.26
CSPG5-203ENST00000456150 ABCC9O60706 1549 aa35.42■■■■□ 3.26
CSPG5-203ENST00000456150 DCAF1Q9Y4B6 1507 aa35.19■■■■□ 3.22
CSPG5-203ENST00000456150 SUPT5HO00267 1087 aaKnown RBP34.83■■■■□ 3.17
CSPG5-203ENST00000456150 MYO15BQ96JP2 1530 aa34.77■■■■□ 3.16
CSPG5-203ENST00000456150 NACADO15069 1562 aa34.65■■■■□ 3.14
CSPG5-203ENST00000456150 RB1CC1Q8TDY2 1594 aa34.4■■■■□ 3.1
CSPG5-203ENST00000456150 SCRIBQ14160 1630 aa34.33■■■■□ 3.09
CSPG5-203ENST00000456150 CHIC1Q5VXU3 224 aa33.89■■■■□ 3.02
CSPG5-203ENST00000456150 UNC13AQ9UPW8 1703 aa33.8■■■■□ 3
CSPG5-203ENST00000456150 BICRAQ9NZM4 1560 aa33.46■■■□□ 2.95
CSPG5-203ENST00000456150 PABPN1Q86U42 306 aaKnown RBP eCLIP33.43■■■□□ 2.94
CSPG5-203ENST00000456150 RSF1Q96T23 1441 aaPredicted RBP33.37■■■□□ 2.93
CSPG5-203ENST00000456150 CECR2Q9BXF3 1484 aa33.27■■■□□ 2.92
CSPG5-203ENST00000456150 MROH2BQ7Z745 1585 aa33.03■■■□□ 2.88
CSPG5-203ENST00000456150 BAZ1AQ9NRL2 1556 aaPredicted RBP32.92■■■□□ 2.86
CSPG5-203ENST00000456150 SMARCA4P51532 1647 aa32.83■■■□□ 2.85
CSPG5-203ENST00000456150 WIZO95785 1651 aa32.77■■■□□ 2.84
CSPG5-203ENST00000456150 LOC105371045A0A1W2PR82 267 aa32.71■■■□□ 2.83
CSPG5-203ENST00000456150 TRIM41Q8WV44 630 aa32.61■■■□□ 2.81
CSPG5-203ENST00000456150 HRCP23327 699 aa32.5■■■□□ 2.79
CSPG5-203ENST00000456150 PCGF6Q9BYE7 350 aa32.5■■■□□ 2.79
CSPG5-203ENST00000456150 EIF4G1Q04637 1599 aaKnown RBP32.43■■■□□ 2.78
CSPG5-203ENST00000456150 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
CSPG5-203ENST00000456150 TOP2AP11388 1531 aaKnown RBP32.34■■■□□ 2.77
CSPG5-203ENST00000456150 ATAD2BQ9ULI0 1458 aa32.33■■■□□ 2.77
CSPG5-203ENST00000456150 SMARCA2P51531 1590 aa32.23■■■□□ 2.75
CSPG5-203ENST00000456150 TRIM26Q12899 539 aaPredicted RBP32.14■■■□□ 2.74
CSPG5-203ENST00000456150 FAM9AQ8IZU1 332 aaPredicted RBP32.12■■■□□ 2.73
CSPG5-203ENST00000456150 BAZ1BQ9UIG0 1483 aaKnown RBP32.12■■■□□ 2.73
CSPG5-203ENST00000456150 CCDC88BA6NC98 1476 aa32.07■■■□□ 2.72
CSPG5-203ENST00000456150 NCAPD3P42695 1498 aa32.02■■■□□ 2.72
CSPG5-203ENST00000456150 CC2D2AQ9P2K1 1620 aa32■■■□□ 2.71
CSPG5-203ENST00000456150 HMGXB3Q12766 1538 aa31.94■■■□□ 2.7
CSPG5-203ENST00000456150 ABCC8Q09428 1581 aa31.79■■■□□ 2.68
CSPG5-203ENST00000456150 EHMT2Q96KQ7 1210 aa31.7■■■□□ 2.67
CSPG5-203ENST00000456150 PPARGC1BQ86YN6 1023 aaKnown RBP31.61■■■□□ 2.65
CSPG5-203ENST00000456150 EEA1Q15075 1411 aa31.52■■■□□ 2.64
CSPG5-203ENST00000456150 ZEB1P37275 1124 aaPredicted RBP31.47■■■□□ 2.63
CSPG5-203ENST00000456150 SOGA1O94964 1423 aa31.41■■■□□ 2.62
CSPG5-203ENST00000456150 DNAJC5BQ9UF47 199 aa31.4■■■□□ 2.62
CSPG5-203ENST00000456150 WRNQ14191 1432 aaPredicted RBP eCLIP31.39■■■□□ 2.62
CSPG5-203ENST00000456150 TNIKQ9UKE5 1360 aa31.31■■■□□ 2.6
CSPG5-203ENST00000456150 CFTRP13569 1480 aa31.31■■■□□ 2.6
CSPG5-203ENST00000456150 CSRNP3Q8WYN3 585 aa31.28■■■□□ 2.6
CSPG5-203ENST00000456150 CEP162Q5TB80 1403 aa31.27■■■□□ 2.6
CSPG5-203ENST00000456150 RUSC2Q8N2Y8 1516 aa31.23■■■□□ 2.59
CSPG5-203ENST00000456150 SYNJ1O43426 1573 aa31.22■■■□□ 2.59
CSPG5-203ENST00000456150 CADPSQ9ULU8 1353 aa31.22■■■□□ 2.59
CSPG5-203ENST00000456150 GOLGA3Q08378 1498 aa31.19■■■□□ 2.58
CSPG5-203ENST00000456150 NESP48681 1621 aa31.09■■■□□ 2.57
CSPG5-203ENST00000456150 PRDM2Q13029 1718 aa31.09■■■□□ 2.57
CSPG5-203ENST00000456150 KIF21BO75037 1637 aa31.08■■■□□ 2.57
CSPG5-203ENST00000456150 UBTFP17480 764 aaKnown RBP31.06■■■□□ 2.56
CSPG5-203ENST00000456150 CEP164Q9UPV0 1460 aa31.06■■■□□ 2.56
CSPG5-203ENST00000456150 TOP2BQ02880 1626 aa30.97■■■□□ 2.55
CSPG5-203ENST00000456150 LAMC3Q9Y6N6 1575 aa30.93■■■□□ 2.54
CSPG5-203ENST00000456150 BIVM-ERCC5R4GMW8 1640 aa30.91■■■□□ 2.54
CSPG5-203ENST00000456150 FANCD2Q9BXW9 1451 aa30.9■■■□□ 2.54
CSPG5-203ENST00000456150 CUX1P39880 1505 aa30.88■■■□□ 2.53
CSPG5-203ENST00000456150 CLIP1P30622 1438 aa30.75■■■□□ 2.51
CSPG5-203ENST00000456150 CCER1Q8TC90 406 aaPredicted RBP30.72■■■□□ 2.51
CSPG5-203ENST00000456150 RAPGEF2Q9Y4G8 1499 aa30.72■■■□□ 2.51
CSPG5-203ENST00000456150 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.71■■■□□ 2.51
CSPG5-203ENST00000456150 PDS5BQ9NTI5 1447 aa30.69■■■□□ 2.5
CSPG5-203ENST00000456150 TTBK1Q5TCY1 1321 aaPredicted RBP30.68■■■□□ 2.5
CSPG5-203ENST00000456150 KIF21AQ7Z4S6 1674 aa30.65■■■□□ 2.5
CSPG5-203ENST00000456150 VPS8Q8N3P4 1428 aa30.64■■■□□ 2.5
CSPG5-203ENST00000456150 ERICH3Q5RHP9 1530 aa30.63■■■□□ 2.49
CSPG5-203ENST00000456150 DNMBPQ6XZF7 1577 aa30.56■■■□□ 2.48
CSPG5-203ENST00000456150 TOPBP1Q92547 1522 aa30.55■■■□□ 2.48
CSPG5-203ENST00000456150 URB2Q14146 1524 aaKnown RBP30.55■■■□□ 2.48
CSPG5-203ENST00000456150 FGD5Q6ZNL6 1462 aa30.55■■■□□ 2.48
CSPG5-203ENST00000456150 PRXQ9BXM0 1461 aa30.55■■■□□ 2.48
CSPG5-203ENST00000456150 KIF27Q86VH2 1401 aa30.47■■■□□ 2.47
CSPG5-203ENST00000456150 APLP2Q06481 763 aa30.43■■■□□ 2.46
CSPG5-203ENST00000456150 POLA1P09884 1462 aaPredicted RBP30.41■■■□□ 2.46
CSPG5-203ENST00000456150 RAD54L2Q9Y4B4 1467 aa30.37■■■□□ 2.45
CSPG5-203ENST00000456150 MRC2Q9UBG0 1479 aa30.33■■■□□ 2.45
CSPG5-203ENST00000456150 CUX2O14529 1486 aa30.33■■■□□ 2.45
CSPG5-203ENST00000456150 ERCC6Q03468 1493 aa30.31■■■□□ 2.44
CSPG5-203ENST00000456150 ARAP1Q96P48 1450 aa30.28■■■□□ 2.44
CSPG5-203ENST00000456150 RANGAP1P46060 587 aaPredicted RBP30.27■■■□□ 2.44
CSPG5-203ENST00000456150 ABCA10Q8WWZ4 1543 aa30.22■■■□□ 2.43
CSPG5-203ENST00000456150 WDR62O43379 1518 aa30.18■■■□□ 2.42
CSPG5-203ENST00000456150 HNRNPUL2Q1KMD3 747 aaKnown RBP30.16■■■□□ 2.42
CSPG5-203ENST00000456150 WDR97A6NE52 1622 aa30.15■■■□□ 2.42
CSPG5-203ENST00000456150 THOC2Q8NI27 1593 aaKnown RBP30.14■■■□□ 2.42
CSPG5-203ENST00000456150 IGF1RP08069 1367 aa30.12■■■□□ 2.41
CSPG5-203ENST00000456150 TARBP1Q13395 1621 aaKnown RBP30.1■■■□□ 2.41
CSPG5-203ENST00000456150 TDRD9Q8NDG6 1382 aaKnown RBP30.08■■■□□ 2.41
CSPG5-203ENST00000456150 ARHGAP35Q9NRY4 1499 aa30.06■■■□□ 2.4
CSPG5-203ENST00000456150 ABCA5Q8WWZ7 1642 aa30■■■□□ 2.39
CSPG5-203ENST00000456150 DIEXFQ68CQ4 756 aaKnown RBP30■■■□□ 2.39
CSPG5-203ENST00000456150 CARMIL1Q5VZK9 1371 aa29.96■■■□□ 2.39
CSPG5-203ENST00000456150 GAPVD1Q14C86 1478 aa29.95■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms