RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 NISCHQ9Y2I1 1504 aa43.97■■■■■ 4.63
USP39-204ENST00000409766 CCDC180Q9P1Z9 1646 aa37.94■■■■□ 3.66
USP39-204ENST00000409766 ZCCHC6Q5VYS8 1495 aaKnown RBP37.07■■■■□ 3.52
USP39-204ENST00000409766 SHROOM4Q9ULL8 1493 aa36.49■■■■□ 3.43
USP39-204ENST00000409766 DCAF1Q9Y4B6 1507 aa36.29■■■■□ 3.4
USP39-204ENST00000409766 DCAF8L2P0C7V8 631 aa36.19■■■■□ 3.38
USP39-204ENST00000409766 ABCC9O60706 1549 aa35.63■■■■□ 3.29
USP39-204ENST00000409766 MYO15BQ96JP2 1530 aa35.58■■■■□ 3.29
USP39-204ENST00000409766 SUPT5HO00267 1087 aaKnown RBP35.44■■■■□ 3.26
USP39-204ENST00000409766 NACADO15069 1562 aa35.18■■■■□ 3.22
USP39-204ENST00000409766 SCRIBQ14160 1630 aa35.1■■■■□ 3.21
USP39-204ENST00000409766 RB1CC1Q8TDY2 1594 aa34.8■■■■□ 3.16
USP39-204ENST00000409766 RSF1Q96T23 1441 aaPredicted RBP34.42■■■■□ 3.1
USP39-204ENST00000409766 CHIC1Q5VXU3 224 aa34.27■■■■□ 3.08
USP39-204ENST00000409766 CECR2Q9BXF3 1484 aa34.18■■■■□ 3.06
USP39-204ENST00000409766 UNC13AQ9UPW8 1703 aa34.16■■■■□ 3.06
USP39-204ENST00000409766 MROH2BQ7Z745 1585 aa34.05■■■■□ 3.04
USP39-204ENST00000409766 BAZ1AQ9NRL2 1556 aaPredicted RBP33.86■■■■□ 3.01
USP39-204ENST00000409766 WIZO95785 1651 aa33.82■■■■□ 3
USP39-204ENST00000409766 BICRAQ9NZM4 1560 aa33.81■■■■□ 3
USP39-204ENST00000409766 SMARCA4P51532 1647 aa33.66■■■□□ 2.98
USP39-204ENST00000409766 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
USP39-204ENST00000409766 TOP2AP11388 1531 aaKnown RBP33.41■■■□□ 2.94
USP39-204ENST00000409766 TRIM41Q8WV44 630 aa33.22■■■□□ 2.91
USP39-204ENST00000409766 PEG3Q9GZU2 1588 aa33.18■■■□□ 2.9
USP39-204ENST00000409766 EIF4G1Q04637 1599 aaKnown RBP33.18■■■□□ 2.9
USP39-204ENST00000409766 SMARCA2P51531 1590 aa33.16■■■□□ 2.9
USP39-204ENST00000409766 CCDC88BA6NC98 1476 aa33.14■■■□□ 2.9
USP39-204ENST00000409766 LOC105371045A0A1W2PR82 267 aa33.06■■■□□ 2.88
USP39-204ENST00000409766 ATAD2BQ9ULI0 1458 aa32.93■■■□□ 2.86
USP39-204ENST00000409766 BAZ1BQ9UIG0 1483 aaKnown RBP32.78■■■□□ 2.84
USP39-204ENST00000409766 ABCC8Q09428 1581 aa32.71■■■□□ 2.83
USP39-204ENST00000409766 FAM9AQ8IZU1 332 aaPredicted RBP32.7■■■□□ 2.82
USP39-204ENST00000409766 NCAPD3P42695 1498 aa32.5■■■□□ 2.79
USP39-204ENST00000409766 HMGXB3Q12766 1538 aa32.5■■■□□ 2.79
USP39-204ENST00000409766 WRNQ14191 1432 aaPredicted RBP eCLIP32.35■■■□□ 2.77
USP39-204ENST00000409766 EHMT2Q96KQ7 1210 aa32.27■■■□□ 2.76
USP39-204ENST00000409766 PCGF6Q9BYE7 350 aa32.26■■■□□ 2.75
USP39-204ENST00000409766 SOGA1O94964 1423 aa32.24■■■□□ 2.75
USP39-204ENST00000409766 CC2D2AQ9P2K1 1620 aa32.24■■■□□ 2.75
USP39-204ENST00000409766 SYNJ1O43426 1573 aa32.22■■■□□ 2.75
USP39-204ENST00000409766 EEA1Q15075 1411 aa32.19■■■□□ 2.74
USP39-204ENST00000409766 RUSC2Q8N2Y8 1516 aa32.1■■■□□ 2.73
USP39-204ENST00000409766 CSRNP3Q8WYN3 585 aa32.03■■■□□ 2.72
USP39-204ENST00000409766 TRIM26Q12899 539 aaPredicted RBP32.01■■■□□ 2.71
USP39-204ENST00000409766 TOP2BQ02880 1626 aa32■■■□□ 2.71
USP39-204ENST00000409766 CFTRP13569 1480 aa32■■■□□ 2.71
USP39-204ENST00000409766 BIVM-ERCC5R4GMW8 1640 aa31.94■■■□□ 2.7
USP39-204ENST00000409766 TNIKQ9UKE5 1360 aa31.87■■■□□ 2.69
USP39-204ENST00000409766 HRCP23327 699 aa31.87■■■□□ 2.69
USP39-204ENST00000409766 PRDM2Q13029 1718 aa31.85■■■□□ 2.69
USP39-204ENST00000409766 GOLGA3Q08378 1498 aa31.82■■■□□ 2.68
USP39-204ENST00000409766 CEP162Q5TB80 1403 aa31.78■■■□□ 2.68
USP39-204ENST00000409766 KIF21BO75037 1637 aa31.78■■■□□ 2.68
USP39-204ENST00000409766 CUX1P39880 1505 aa31.77■■■□□ 2.68
USP39-204ENST00000409766 CEP164Q9UPV0 1460 aa31.75■■■□□ 2.67
USP39-204ENST00000409766 CADPSQ9ULU8 1353 aa31.74■■■□□ 2.67
USP39-204ENST00000409766 UBTFP17480 764 aaKnown RBP31.7■■■□□ 2.67
USP39-204ENST00000409766 RAPGEF2Q9Y4G8 1499 aa31.53■■■□□ 2.64
USP39-204ENST00000409766 DNAJC5BQ9UF47 199 aa31.47■■■□□ 2.63
USP39-204ENST00000409766 PPARGC1BQ86YN6 1023 aaKnown RBP31.46■■■□□ 2.63
USP39-204ENST00000409766 KIF27Q86VH2 1401 aa31.45■■■□□ 2.62
USP39-204ENST00000409766 PRXQ9BXM0 1461 aa31.44■■■□□ 2.62
USP39-204ENST00000409766 ERICH3Q5RHP9 1530 aa31.42■■■□□ 2.62
USP39-204ENST00000409766 FANCD2Q9BXW9 1451 aa31.4■■■□□ 2.62
USP39-204ENST00000409766 CLIP1P30622 1438 aa31.36■■■□□ 2.61
USP39-204ENST00000409766 NESP48681 1621 aa31.35■■■□□ 2.61
USP39-204ENST00000409766 LAMC3Q9Y6N6 1575 aa31.31■■■□□ 2.6
USP39-204ENST00000409766 FGD5Q6ZNL6 1462 aa31.31■■■□□ 2.6
USP39-204ENST00000409766 CUX2O14529 1486 aa31.23■■■□□ 2.59
USP39-204ENST00000409766 DNMBPQ6XZF7 1577 aa31.22■■■□□ 2.59
USP39-204ENST00000409766 VPS8Q8N3P4 1428 aa31.18■■■□□ 2.58
USP39-204ENST00000409766 TOPBP1Q92547 1522 aa31.14■■■□□ 2.58
USP39-204ENST00000409766 IGF1RP08069 1367 aa31.14■■■□□ 2.58
USP39-204ENST00000409766 POLA1P09884 1462 aaPredicted RBP31.06■■■□□ 2.56
USP39-204ENST00000409766 PDS5BQ9NTI5 1447 aa31.06■■■□□ 2.56
USP39-204ENST00000409766 TTBK1Q5TCY1 1321 aaPredicted RBP31.06■■■□□ 2.56
USP39-204ENST00000409766 RANGAP1P46060 587 aaPredicted RBP31.05■■■□□ 2.56
USP39-204ENST00000409766 ZEB1P37275 1124 aaPredicted RBP31.03■■■□□ 2.56
USP39-204ENST00000409766 ABCA10Q8WWZ4 1543 aa31.02■■■□□ 2.56
USP39-204ENST00000409766 RAD54L2Q9Y4B4 1467 aa31■■■□□ 2.55
USP39-204ENST00000409766 URB2Q14146 1524 aaKnown RBP31■■■□□ 2.55
USP39-204ENST00000409766 ARAP1Q96P48 1450 aa30.98■■■□□ 2.55
USP39-204ENST00000409766 CARMIL1Q5VZK9 1371 aa30.98■■■□□ 2.55
USP39-204ENST00000409766 KIF21AQ7Z4S6 1674 aa30.95■■■□□ 2.54
USP39-204ENST00000409766 APLP2Q06481 763 aa30.86■■■□□ 2.53
USP39-204ENST00000409766 WDR97A6NE52 1622 aa30.86■■■□□ 2.53
USP39-204ENST00000409766 ARHGAP35Q9NRY4 1499 aa30.85■■■□□ 2.53
USP39-204ENST00000409766 CUL7Q14999 1698 aa30.77■■■□□ 2.52
USP39-204ENST00000409766 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.73■■■□□ 2.51
USP39-204ENST00000409766 ABCA5Q8WWZ7 1642 aa30.72■■■□□ 2.51
USP39-204ENST00000409766 MRC2Q9UBG0 1479 aa30.66■■■□□ 2.5
USP39-204ENST00000409766 CCER1Q8TC90 406 aaPredicted RBP30.64■■■□□ 2.5
USP39-204ENST00000409766 TDRD9Q8NDG6 1382 aaKnown RBP30.64■■■□□ 2.5
USP39-204ENST00000409766 TARBP1Q13395 1621 aaKnown RBP30.63■■■□□ 2.49
USP39-204ENST00000409766 GAPVD1Q14C86 1478 aa30.63■■■□□ 2.49
USP39-204ENST00000409766 KANK4Q5T7N3 995 aaPredicted RBP30.57■■■□□ 2.48
USP39-204ENST00000409766 CTTNBP2Q8WZ74 1663 aa30.57■■■□□ 2.48
USP39-204ENST00000409766 WDR62O43379 1518 aa30.51■■■□□ 2.47
USP39-204ENST00000409766 ERCC6Q03468 1493 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms