RNA–Protein interactions for RNA: ENST00000538410.5

COPS7A-208, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3 BASIC

Gene COPS7A, Length 1,610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-208ENST00000538410 NISCHQ9Y2I1 1504 aa47.78■■■■■ 5.24
COPS7A-208ENST00000538410 CCDC180Q9P1Z9 1646 aa42.61■■■■■ 4.41
COPS7A-208ENST00000538410 ABCC9O60706 1549 aa42.07■■■■■ 4.33
COPS7A-208ENST00000538410 RB1CC1Q8TDY2 1594 aa40.3■■■■■ 4.04
COPS7A-208ENST00000538410 NACADO15069 1562 aa40.15■■■■■ 4.02
COPS7A-208ENST00000538410 DCAF8L2P0C7V8 631 aa40.09■■■■■ 4.01
COPS7A-208ENST00000538410 ZCCHC6Q5VYS8 1495 aaKnown RBP40.04■■■■■ 4
COPS7A-208ENST00000538410 MYO15BQ96JP2 1530 aa39.75■■■■□ 3.95
COPS7A-208ENST00000538410 DCAF1Q9Y4B6 1507 aa39.56■■■■□ 3.92
COPS7A-208ENST00000538410 UNC13AQ9UPW8 1703 aa39.41■■■■□ 3.9
COPS7A-208ENST00000538410 PABPN1Q86U42 306 aaKnown RBP eCLIP39.25■■■■□ 3.87
COPS7A-208ENST00000538410 BICRAQ9NZM4 1560 aa39.07■■■■□ 3.84
COPS7A-208ENST00000538410 DNAJC5BQ9UF47 199 aa38.96■■■■□ 3.83
COPS7A-208ENST00000538410 SCRIBQ14160 1630 aa38.85■■■■□ 3.81
COPS7A-208ENST00000538410 SHROOM4Q9ULL8 1493 aa38.61■■■■□ 3.77
COPS7A-208ENST00000538410 EIF4G1Q04637 1599 aaKnown RBP38.08■■■■□ 3.69
COPS7A-208ENST00000538410 CC2D2AQ9P2K1 1620 aa38.05■■■■□ 3.68
COPS7A-208ENST00000538410 CECR2Q9BXF3 1484 aa37.84■■■■□ 3.65
COPS7A-208ENST00000538410 SMARCA4P51532 1647 aa37.11■■■■□ 3.53
COPS7A-208ENST00000538410 NCAPD3P42695 1498 aa37.03■■■■□ 3.52
COPS7A-208ENST00000538410 BAZ1AQ9NRL2 1556 aaPredicted RBP37.01■■■■□ 3.52
COPS7A-208ENST00000538410 ATAD2BQ9ULI0 1458 aa37■■■■□ 3.51
COPS7A-208ENST00000538410 SMARCA2P51531 1590 aa36.95■■■■□ 3.51
COPS7A-208ENST00000538410 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
COPS7A-208ENST00000538410 RSF1Q96T23 1441 aaPredicted RBP36.82■■■■□ 3.49
COPS7A-208ENST00000538410 HMGXB3Q12766 1538 aa36.81■■■■□ 3.48
COPS7A-208ENST00000538410 SUPT5HO00267 1087 aaKnown RBP36.77■■■■□ 3.48
COPS7A-208ENST00000538410 PEG3Q9GZU2 1588 aa36.74■■■■□ 3.47
COPS7A-208ENST00000538410 BAZ1BQ9UIG0 1483 aaKnown RBP36.69■■■■□ 3.46
COPS7A-208ENST00000538410 WIZO95785 1651 aa36.59■■■■□ 3.45
COPS7A-208ENST00000538410 ERCC6Q03468 1493 aa36.31■■■■□ 3.4
COPS7A-208ENST00000538410 NESP48681 1621 aa36.28■■■■□ 3.4
COPS7A-208ENST00000538410 TOP2AP11388 1531 aaKnown RBP36.19■■■■□ 3.38
COPS7A-208ENST00000538410 LAMC3Q9Y6N6 1575 aa36.14■■■■□ 3.38
COPS7A-208ENST00000538410 CUX2O14529 1486 aa36.04■■■■□ 3.36
COPS7A-208ENST00000538410 CADPSQ9ULU8 1353 aa35.94■■■■□ 3.34
COPS7A-208ENST00000538410 PDS5BQ9NTI5 1447 aa35.92■■■■□ 3.34
COPS7A-208ENST00000538410 KIF21AQ7Z4S6 1674 aa35.87■■■■□ 3.33
COPS7A-208ENST00000538410 THOC2Q8NI27 1593 aaKnown RBP35.81■■■■□ 3.32
COPS7A-208ENST00000538410 CCDC88BA6NC98 1476 aa35.76■■■■□ 3.32
COPS7A-208ENST00000538410 CFTRP13569 1480 aa35.63■■■■□ 3.29
COPS7A-208ENST00000538410 MRC2Q9UBG0 1479 aa35.56■■■■□ 3.28
COPS7A-208ENST00000538410 FANCD2Q9BXW9 1451 aa35.54■■■■□ 3.28
COPS7A-208ENST00000538410 CEP164Q9UPV0 1460 aa35.53■■■■□ 3.28
COPS7A-208ENST00000538410 WDR62O43379 1518 aa35.45■■■■□ 3.27
COPS7A-208ENST00000538410 DNAJC5Q9H3Z4 198 aa35.42■■■■□ 3.26
COPS7A-208ENST00000538410 PRDM2Q13029 1718 aa35.39■■■■□ 3.26
COPS7A-208ENST00000538410 URB2Q14146 1524 aaKnown RBP35.2■■■■□ 3.23
COPS7A-208ENST00000538410 CHIC1Q5VXU3 224 aa34.98■■■■□ 3.19
COPS7A-208ENST00000538410 TOPBP1Q92547 1522 aa34.92■■■■□ 3.18
COPS7A-208ENST00000538410 ABCC8Q09428 1581 aa34.92■■■■□ 3.18
COPS7A-208ENST00000538410 DNMBPQ6XZF7 1577 aa34.85■■■■□ 3.17
COPS7A-208ENST00000538410 IFT140Q96RY7 1462 aa34.8■■■■□ 3.16
COPS7A-208ENST00000538410 WRNQ14191 1432 aaPredicted RBP eCLIP34.69■■■■□ 3.14
COPS7A-208ENST00000538410 ZNF608Q9ULD9 1512 aaPredicted RBP34.68■■■■□ 3.14
COPS7A-208ENST00000538410 TRIM41Q8WV44 630 aa34.65■■■■□ 3.14
COPS7A-208ENST00000538410 SYNJ1O43426 1573 aa34.6■■■■□ 3.13
COPS7A-208ENST00000538410 POLA1P09884 1462 aaPredicted RBP34.59■■■■□ 3.13
COPS7A-208ENST00000538410 TARBP1Q13395 1621 aaKnown RBP34.57■■■■□ 3.13
COPS7A-208ENST00000538410 BIVM-ERCC5R4GMW8 1640 aa34.54■■■■□ 3.12
COPS7A-208ENST00000538410 TOP2BQ02880 1626 aa34.53■■■■□ 3.12
COPS7A-208ENST00000538410 EIF4G3O43432 1585 aaKnown RBP34.53■■■■□ 3.12
COPS7A-208ENST00000538410 OSCARQ8IYS5 282 aa34.52■■■■□ 3.12
COPS7A-208ENST00000538410 CUX1P39880 1505 aa34.51■■■■□ 3.12
COPS7A-208ENST00000538410 SOGA1O94964 1423 aa34.46■■■■□ 3.11
COPS7A-208ENST00000538410 FGD5Q6ZNL6 1462 aa34.46■■■■□ 3.11
COPS7A-208ENST00000538410 RAD54L2Q9Y4B4 1467 aa34.46■■■■□ 3.11
COPS7A-208ENST00000538410 AQRO60306 1485 aaKnown RBP eCLIP34.44■■■■□ 3.1
COPS7A-208ENST00000538410 TDRD9Q8NDG6 1382 aaKnown RBP34.31■■■■□ 3.08
COPS7A-208ENST00000538410 WDR97A6NE52 1622 aa34.28■■■■□ 3.08
COPS7A-208ENST00000538410 CHD1O14646 1710 aa34.2■■■■□ 3.07
COPS7A-208ENST00000538410 FBLN2P98095 1184 aa34.15■■■■□ 3.06
COPS7A-208ENST00000538410 SNAPC4Q5SXM2 1469 aa34.11■■■■□ 3.05
COPS7A-208ENST00000538410 GRIN2BQ13224 1484 aa34.1■■■■□ 3.05
COPS7A-208ENST00000538410 ABCA10Q8WWZ4 1543 aa34.1■■■■□ 3.05
COPS7A-208ENST00000538410 GAPVD1Q14C86 1478 aa34.05■■■■□ 3.04
COPS7A-208ENST00000538410 MAGI1Q96QZ7 1491 aaPredicted RBP34.05■■■■□ 3.04
COPS7A-208ENST00000538410 PBRM1Q86U86 1689 aa34.04■■■■□ 3.04
COPS7A-208ENST00000538410 ABCA5Q8WWZ7 1642 aa34.01■■■■□ 3.03
COPS7A-208ENST00000538410 RIMBP3CA6NJZ7 1639 aa33.99■■■■□ 3.03
COPS7A-208ENST00000538410 RIMBP3BA6NNM3 1639 aa33.99■■■■□ 3.03
COPS7A-208ENST00000538410 RIMBP3Q9UFD9 1639 aa33.99■■■■□ 3.03
COPS7A-208ENST00000538410 CHMP7Q8WUX9 453 aaPredicted RBP33.98■■■■□ 3.03
COPS7A-208ENST00000538410 RUSC2Q8N2Y8 1516 aa33.97■■■■□ 3.03
COPS7A-208ENST00000538410 EEA1Q15075 1411 aa33.96■■■■□ 3.03
COPS7A-208ENST00000538410 FAM9AQ8IZU1 332 aaPredicted RBP33.94■■■■□ 3.02
COPS7A-208ENST00000538410 SYNJ2O15056 1496 aa33.92■■■■□ 3.02
COPS7A-208ENST00000538410 ARHGEF11O15085 1522 aa33.92■■■■□ 3.02
COPS7A-208ENST00000538410 KIF27Q86VH2 1401 aa33.85■■■■□ 3.01
COPS7A-208ENST00000538410 CLASP1Q7Z460 1538 aa33.78■■■■□ 3
COPS7A-208ENST00000538410 CSRNP3Q8WYN3 585 aa33.75■■■□□ 2.99
COPS7A-208ENST00000538410 ADAMTS12P58397 1594 aa33.71■■■□□ 2.99
COPS7A-208ENST00000538410 ERICH3Q5RHP9 1530 aa33.69■■■□□ 2.98
COPS7A-208ENST00000538410 CYB5RLQ6IPT4 315 aa33.66■■■□□ 2.98
COPS7A-208ENST00000538410 GRIN2AQ12879 1464 aa33.65■■■□□ 2.98
COPS7A-208ENST00000538410 FHAD1B1AJZ9 1412 aa33.64■■■□□ 2.98
COPS7A-208ENST00000538410 ARAP1Q96P48 1450 aa33.61■■■□□ 2.97
COPS7A-208ENST00000538410 KIF21BO75037 1637 aa33.59■■■□□ 2.97
COPS7A-208ENST00000538410 IGF1RP08069 1367 aa33.58■■■□□ 2.97
COPS7A-208ENST00000538410 LOC105371045A0A1W2PR82 267 aa33.57■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms