RNA–Protein interactions for RNA: ENST00000341316.6

SPG7-202, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 1 (best) BASIC

Gene SPG7, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-202ENST00000341316 NISCHQ9Y2I1 1504 aa42.99■■■■■ 4.47
SPG7-202ENST00000341316 CCDC180Q9P1Z9 1646 aa36.77■■■■□ 3.48
SPG7-202ENST00000341316 ZCCHC6Q5VYS8 1495 aaKnown RBP36.29■■■■□ 3.4
SPG7-202ENST00000341316 SHROOM4Q9ULL8 1493 aa36.2■■■■□ 3.39
SPG7-202ENST00000341316 DCAF8L2P0C7V8 631 aa35.56■■■■□ 3.28
SPG7-202ENST00000341316 DCAF1Q9Y4B6 1507 aa35.33■■■■□ 3.25
SPG7-202ENST00000341316 SUPT5HO00267 1087 aaKnown RBP35.28■■■■□ 3.24
SPG7-202ENST00000341316 MYO15BQ96JP2 1530 aa34.48■■■■□ 3.11
SPG7-202ENST00000341316 ABCC9O60706 1549 aa34.33■■■■□ 3.09
SPG7-202ENST00000341316 SCRIBQ14160 1630 aa34.32■■■■□ 3.08
SPG7-202ENST00000341316 CHIC1Q5VXU3 224 aa34.19■■■■□ 3.06
SPG7-202ENST00000341316 NACADO15069 1562 aa34.08■■■■□ 3.05
SPG7-202ENST00000341316 RSF1Q96T23 1441 aaPredicted RBP33.85■■■■□ 3.01
SPG7-202ENST00000341316 RB1CC1Q8TDY2 1594 aa33.58■■■□□ 2.97
SPG7-202ENST00000341316 CECR2Q9BXF3 1484 aa33.54■■■□□ 2.96
SPG7-202ENST00000341316 MROH2BQ7Z745 1585 aa33.39■■■□□ 2.94
SPG7-202ENST00000341316 WIZO95785 1651 aa33.17■■■□□ 2.9
SPG7-202ENST00000341316 LOC105371045A0A1W2PR82 267 aa33.12■■■□□ 2.89
SPG7-202ENST00000341316 UNC13AQ9UPW8 1703 aa33.09■■■□□ 2.89
SPG7-202ENST00000341316 BAZ1AQ9NRL2 1556 aaPredicted RBP33.03■■■□□ 2.88
SPG7-202ENST00000341316 TRIM41Q8WV44 630 aa32.93■■■□□ 2.86
SPG7-202ENST00000341316 SMARCA4P51532 1647 aa32.82■■■□□ 2.84
SPG7-202ENST00000341316 PABPN1Q86U42 306 aaKnown RBP eCLIP32.74■■■□□ 2.83
SPG7-202ENST00000341316 BICRAQ9NZM4 1560 aa32.74■■■□□ 2.83
SPG7-202ENST00000341316 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
SPG7-202ENST00000341316 HRCP23327 699 aa32.63■■■□□ 2.81
SPG7-202ENST00000341316 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
SPG7-202ENST00000341316 PCGF6Q9BYE7 350 aa32.61■■■□□ 2.81
SPG7-202ENST00000341316 FAM9AQ8IZU1 332 aaPredicted RBP32.6■■■□□ 2.81
SPG7-202ENST00000341316 CCDC88BA6NC98 1476 aa32.51■■■□□ 2.8
SPG7-202ENST00000341316 SMARCA2P51531 1590 aa32.48■■■□□ 2.79
SPG7-202ENST00000341316 EHMT2Q96KQ7 1210 aa32.28■■■□□ 2.76
SPG7-202ENST00000341316 PEG3Q9GZU2 1588 aa32.26■■■□□ 2.76
SPG7-202ENST00000341316 ABCC8Q09428 1581 aa32.26■■■□□ 2.75
SPG7-202ENST00000341316 TRIM26Q12899 539 aaPredicted RBP32.14■■■□□ 2.74
SPG7-202ENST00000341316 ATAD2BQ9ULI0 1458 aa32.08■■■□□ 2.73
SPG7-202ENST00000341316 BAZ1BQ9UIG0 1483 aaKnown RBP31.93■■■□□ 2.7
SPG7-202ENST00000341316 PPARGC1BQ86YN6 1023 aaKnown RBP31.93■■■□□ 2.7
SPG7-202ENST00000341316 SOGA1O94964 1423 aa31.88■■■□□ 2.69
SPG7-202ENST00000341316 WRNQ14191 1432 aaPredicted RBP eCLIP31.78■■■□□ 2.68
SPG7-202ENST00000341316 RUSC2Q8N2Y8 1516 aa31.75■■■□□ 2.67
SPG7-202ENST00000341316 SYNJ1O43426 1573 aa31.67■■■□□ 2.66
SPG7-202ENST00000341316 EEA1Q15075 1411 aa31.66■■■□□ 2.66
SPG7-202ENST00000341316 CSRNP3Q8WYN3 585 aa31.64■■■□□ 2.66
SPG7-202ENST00000341316 NCAPD3P42695 1498 aa31.55■■■□□ 2.64
SPG7-202ENST00000341316 TNIKQ9UKE5 1360 aa31.52■■■□□ 2.64
SPG7-202ENST00000341316 CEP162Q5TB80 1403 aa31.52■■■□□ 2.64
SPG7-202ENST00000341316 HMGXB3Q12766 1538 aa31.51■■■□□ 2.63
SPG7-202ENST00000341316 UBTFP17480 764 aaKnown RBP31.41■■■□□ 2.62
SPG7-202ENST00000341316 GOLGA3Q08378 1498 aa31.41■■■□□ 2.62
SPG7-202ENST00000341316 TOP2BQ02880 1626 aa31.32■■■□□ 2.6
SPG7-202ENST00000341316 CEP164Q9UPV0 1460 aa31.28■■■□□ 2.6
SPG7-202ENST00000341316 KIF21BO75037 1637 aa31.27■■■□□ 2.6
SPG7-202ENST00000341316 BIVM-ERCC5R4GMW8 1640 aa31.23■■■□□ 2.59
SPG7-202ENST00000341316 ZEB1P37275 1124 aaPredicted RBP31.21■■■□□ 2.59
SPG7-202ENST00000341316 CFTRP13569 1480 aa31.17■■■□□ 2.58
SPG7-202ENST00000341316 TTBK1Q5TCY1 1321 aaPredicted RBP31.13■■■□□ 2.57
SPG7-202ENST00000341316 RAPGEF2Q9Y4G8 1499 aa31.13■■■□□ 2.57
SPG7-202ENST00000341316 CUX1P39880 1505 aa31.12■■■□□ 2.57
SPG7-202ENST00000341316 CLIP1P30622 1438 aa31.02■■■□□ 2.56
SPG7-202ENST00000341316 CC2D2AQ9P2K1 1620 aa30.94■■■□□ 2.54
SPG7-202ENST00000341316 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.93■■■□□ 2.54
SPG7-202ENST00000341316 PRXQ9BXM0 1461 aa30.91■■■□□ 2.54
SPG7-202ENST00000341316 CADPSQ9ULU8 1353 aa30.88■■■□□ 2.53
SPG7-202ENST00000341316 PRDM2Q13029 1718 aa30.88■■■□□ 2.53
SPG7-202ENST00000341316 VPS8Q8N3P4 1428 aa30.85■■■□□ 2.53
SPG7-202ENST00000341316 ERICH3Q5RHP9 1530 aa30.85■■■□□ 2.53
SPG7-202ENST00000341316 RANGAP1P46060 587 aaPredicted RBP30.84■■■□□ 2.53
SPG7-202ENST00000341316 KIF27Q86VH2 1401 aa30.82■■■□□ 2.52
SPG7-202ENST00000341316 CCER1Q8TC90 406 aaPredicted RBP30.78■■■□□ 2.52
SPG7-202ENST00000341316 ARAP1Q96P48 1450 aa30.62■■■□□ 2.49
SPG7-202ENST00000341316 CUX2O14529 1486 aa30.62■■■□□ 2.49
SPG7-202ENST00000341316 FGD5Q6ZNL6 1462 aa30.6■■■□□ 2.49
SPG7-202ENST00000341316 FANCD2Q9BXW9 1451 aa30.57■■■□□ 2.48
SPG7-202ENST00000341316 APLP2Q06481 763 aa30.57■■■□□ 2.48
SPG7-202ENST00000341316 IGF1RP08069 1367 aa30.56■■■□□ 2.48
SPG7-202ENST00000341316 NESP48681 1621 aa30.49■■■□□ 2.47
SPG7-202ENST00000341316 HNRNPUL2Q1KMD3 747 aaKnown RBP30.45■■■□□ 2.47
SPG7-202ENST00000341316 ARHGAP35Q9NRY4 1499 aa30.42■■■□□ 2.46
SPG7-202ENST00000341316 DNAJC5BQ9UF47 199 aa30.39■■■□□ 2.46
SPG7-202ENST00000341316 CARMIL1Q5VZK9 1371 aa30.39■■■□□ 2.46
SPG7-202ENST00000341316 DNMBPQ6XZF7 1577 aa30.38■■■□□ 2.45
SPG7-202ENST00000341316 KANK4Q5T7N3 995 aaPredicted RBP30.36■■■□□ 2.45
SPG7-202ENST00000341316 TOPBP1Q92547 1522 aa30.34■■■□□ 2.45
SPG7-202ENST00000341316 RAD54L2Q9Y4B4 1467 aa30.34■■■□□ 2.45
SPG7-202ENST00000341316 POLA1P09884 1462 aaPredicted RBP30.3■■■□□ 2.44
SPG7-202ENST00000341316 ABCA10Q8WWZ4 1543 aa30.26■■■□□ 2.43
SPG7-202ENST00000341316 LAMC3Q9Y6N6 1575 aa30.24■■■□□ 2.43
SPG7-202ENST00000341316 SCAF1Q9H7N4 1312 aaKnown RBP30.23■■■□□ 2.43
SPG7-202ENST00000341316 URB2Q14146 1524 aaKnown RBP30.18■■■□□ 2.42
SPG7-202ENST00000341316 RRBP1Q9P2E9 1410 aaKnown RBP30.09■■■□□ 2.41
SPG7-202ENST00000341316 PDS5BQ9NTI5 1447 aa30.04■■■□□ 2.4
SPG7-202ENST00000341316 WDR97A6NE52 1622 aa30.03■■■□□ 2.4
SPG7-202ENST00000341316 CUL7Q14999 1698 aa30.01■■■□□ 2.39
SPG7-202ENST00000341316 TIAM1Q13009 1591 aa30■■■□□ 2.39
SPG7-202ENST00000341316 P3H3Q8IVL6 736 aa29.99■■■□□ 2.39
SPG7-202ENST00000341316 MAP3K1Q13233 1512 aa29.97■■■□□ 2.39
SPG7-202ENST00000341316 TDRD9Q8NDG6 1382 aaKnown RBP29.97■■■□□ 2.39
SPG7-202ENST00000341316 KIF21AQ7Z4S6 1674 aa29.96■■■□□ 2.39
SPG7-202ENST00000341316 CCNB3Q8WWL7 1395 aa29.95■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms