Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM1O15116 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LSM1O15116 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
LSM1O15116 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LSM1O15116 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.93■□□□□ 0.78
LSM1O15116 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LSM1O15116 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.93■□□□□ 0.78
LSM1O15116 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM1O15116 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
LSM1O15116 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
LSM1O15116 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.93■□□□□ 0.78
LSM1O15116 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LSM1O15116 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.92■□□□□ 0.78
LSM1O15116 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM1O15116 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LSM1O15116 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM1O15116 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.92■□□□□ 0.78
LSM1O15116 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.92■□□□□ 0.78
LSM1O15116 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.92■□□□□ 0.78
LSM1O15116 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.92■□□□□ 0.78
LSM1O15116 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LSM1O15116 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LSM1O15116 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LSM1O15116 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.91■□□□□ 0.78
LSM1O15116 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 AC011484.1-201ENST00000377652 1995 ntBASIC19.91■□□□□ 0.78
LSM1O15116 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LSM1O15116 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
LSM1O15116 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.9■□□□□ 0.78
LSM1O15116 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 AL139246.5-201ENST00000606645 996 ntBASIC19.9■□□□□ 0.78
LSM1O15116 AL358852.1-201ENST00000623174 1268 ntBASIC19.9■□□□□ 0.78
LSM1O15116 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LSM1O15116 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.9■□□□□ 0.78
LSM1O15116 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 AC020907.5-201ENST00000624372 1936 ntBASIC19.9■□□□□ 0.78
LSM1O15116 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LSM1O15116 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LSM1O15116 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.89■□□□□ 0.77
LSM1O15116 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.89■□□□□ 0.77
LSM1O15116 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.89■□□□□ 0.77
LSM1O15116 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
LSM1O15116 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LSM1O15116 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.89■□□□□ 0.77
LSM1O15116 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.89■□□□□ 0.77
LSM1O15116 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LSM1O15116 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LSM1O15116 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LSM1O15116 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.89■□□□□ 0.77
LSM1O15116 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LSM1O15116 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.88■□□□□ 0.77
LSM1O15116 FP700111.2-201ENST00000619190 1892 ntBASIC19.88■□□□□ 0.77
LSM1O15116 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LSM1O15116 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LSM1O15116 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms